/EXTERNAL CREST/mapping_coverage/K006470_1_lane_gembs
BACK
SAMPLE K006470_1_lane_gembs
Read Level Counts
| Type |
#reads |
% |
#bases |
% |
| Total |
398098109 |
100% |
25417170318 |
100% |
| Mapped |
398098109 |
100.00 % |
25417170318 |
100.00 % |
| Passed |
258591203 |
64.96 % |
20144915118 |
79.26 % |
| NotPassed |
139506906 |
35.04 % |
5272255200 |
20.74 % |
| |
|
|
|
|
| LowMAPQ |
54919325 |
13.80 % |
5272255200 |
20.74 % |
| MateUnmapped |
0 |
0.00 % |
0 |
0.00 % |
| Duplicate |
84587581 |
21.25 % |
0 |
0.00 % |
| BadOrientation |
0 |
0.00 % |
0 |
0.00 % |
| LargeInsertSize |
0 |
0.00 % |
0 |
0.00 % |
| |
|
|
|
|
| NotCorrectlyAligned |
0 |
0.00 % |
0 |
0.00 % |
| Unmapped |
0 |
0.00 % |
0 |
0.00 % |
Base Level Counts
| Bases |
# |
% |
| Total |
12421535808 |
100% |
| Passed |
11427906369 |
92.00 % |
| Trimmed |
609723818 |
4.91 % |
| Clipped |
262526212 |
2.11 % |
| Overlapping |
0 |
0.00 % |
| LowQuality |
121379409 |
0.98 % |
Coverage and Quality
| Coverage Distribution |
Quality Distribution |
 |
 |
| GC/Coverage Heatmap |
Non-CpG Read Profile |
 |
 |