/EXTERNAL CREST/methylation/K006470_1_lane_gembs

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SAMPLE K006470_1_lane_gembs




CpG counts

Type Total Pass %
RefCpG 24762224 814249 3.29 %
NonRefCpG 715392 2840 0.40 %

Coverage CpGs




Coverage Reference CpGs Coverage Information Reads Reference CpGs
./IMG//K006470_1_lane_gembs_coverage_refCpG.png ./IMG//K006470_1_lane_gembs_coverage_refCpGInf.png



Coverage Non Reference CpGs Coverage Information Reads Non-Reference CpGs
./IMG//K006470_1_lane_gembs_coverage_nonRefCpG.png ./IMG//K006470_1_lane_gembs_coverage_nonRefCpGinf.png

Quality CpGs




Genotype Quality Phred scaled Reference CpGs Genotype Quality Phred scaled Non-Reference CpGs
./IMG//K006470_1_lane_gembs_quality_refcpg.png ./IMG//K006470_1_lane_gembs_quality_nonRefCpg.png

Methylation CpGs




CpGs Methylation Distribution
./IMG//K006470_1_lane_gembs_methylation_levels.png

CpG Methylation Profile (From Individual Strands)

Type #AllReferenceCpG % #PassedReferenceCpG % #AllNonReferenceCpG % #PassedNonReferenceCpG %
Unmethylated (0-0.3) 11573946 27.16 % 286281 9.71 % 525199 44.68 % 2704 15.26 %
Intermediate (0.3-0.7) 15311700 35.93 % 682405 23.13 % 411015 34.96 % 4523 25.53 %
Methylated (0.7-1) 15730493 36.91 % 1981101 67.16 % 239378 20.36 % 10489 59.20 %
Median Methylation 0.560 0.820 0.350 0.770