/EXTERNAL CREST/mapping_coverage/K006477_1_lane_gembs
BACK
SAMPLE K006477_1_lane_gembs
Read Level Counts
| Type |
#reads |
% |
#bases |
% |
| Total |
523880808 |
100% |
34509956272 |
100% |
| Mapped |
523880808 |
100.00 % |
34509956272 |
100.00 % |
| Passed |
318139770 |
60.73 % |
27381535792 |
79.34 % |
| NotPassed |
205741038 |
39.27 % |
7128420480 |
20.66 % |
| |
|
|
|
|
| LowMAPQ |
74254380 |
14.17 % |
7128420480 |
20.66 % |
| MateUnmapped |
0 |
0.00 % |
0 |
0.00 % |
| Duplicate |
131486658 |
25.10 % |
0 |
0.00 % |
| BadOrientation |
0 |
0.00 % |
0 |
0.00 % |
| LargeInsertSize |
0 |
0.00 % |
0 |
0.00 % |
| |
|
|
|
|
| NotCorrectlyAligned |
0 |
0.00 % |
0 |
0.00 % |
| Unmapped |
0 |
0.00 % |
0 |
0.00 % |
Base Level Counts
| Bases |
# |
% |
| Total |
15285805632 |
100% |
| Passed |
13999535912 |
91.59 % |
| Trimmed |
744871848 |
4.87 % |
| Clipped |
356000083 |
2.33 % |
| Overlapping |
0 |
0.00 % |
| LowQuality |
185397789 |
1.21 % |
Coverage and Quality
| Coverage Distribution |
Quality Distribution |
 |
 |
| GC/Coverage Heatmap |
Non-CpG Read Profile |
 |
 |