/EXTERNAL CREST/methylation/K006477_1_lane_gembs

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SAMPLE K006477_1_lane_gembs




CpG counts

Type Total Pass %
RefCpG 24847747 1034319 4.16 %
NonRefCpG 621088 3983 0.64 %

Coverage CpGs




Coverage Reference CpGs Coverage Information Reads Reference CpGs
./IMG//K006477_1_lane_gembs_coverage_refCpG.png ./IMG//K006477_1_lane_gembs_coverage_refCpGInf.png



Coverage Non Reference CpGs Coverage Information Reads Non-Reference CpGs
./IMG//K006477_1_lane_gembs_coverage_nonRefCpG.png ./IMG//K006477_1_lane_gembs_coverage_nonRefCpGinf.png

Quality CpGs




Genotype Quality Phred scaled Reference CpGs Genotype Quality Phred scaled Non-Reference CpGs
./IMG//K006477_1_lane_gembs_quality_refcpg.png ./IMG//K006477_1_lane_gembs_quality_nonRefCpg.png

Methylation CpGs




CpGs Methylation Distribution
./IMG//K006477_1_lane_gembs_methylation_levels.png

CpG Methylation Profile (From Individual Strands)

Type #AllReferenceCpG % #PassedReferenceCpG % #AllNonReferenceCpG % #PassedNonReferenceCpG %
Unmethylated (0-0.3) 18376437 41.67 % 1083836 23.02 % 542994 51.37 % 8549 28.45 %
Intermediate (0.3-0.7) 15122962 34.29 % 1285284 27.30 % 355651 33.65 % 8899 29.62 %
Methylated (0.7-1) 10598604 24.03 % 2338161 49.67 % 158347 14.98 % 12598 41.93 %
Median Methylation 0.390 0.690 0.290 0.600