/EXTERNAL CREST/mapping_coverage/K006476_1_lane_gembs
BACK
SAMPLE K006476_1_lane_gembs
Read Level Counts
| Type |
#reads |
% |
#bases |
% |
| Total |
949417510 |
100% |
67064266723 |
100% |
| Mapped |
949417510 |
100.00 % |
67064266723 |
100.00 % |
| Passed |
495877425 |
52.23 % |
52747819249 |
78.65 % |
| NotPassed |
453540085 |
47.77 % |
14316447474 |
21.35 % |
| |
|
|
|
|
| LowMAPQ |
147592242 |
15.55 % |
14316447474 |
21.35 % |
| MateUnmapped |
0 |
0.00 % |
0 |
0.00 % |
| Duplicate |
305947843 |
32.22 % |
0 |
0.00 % |
| BadOrientation |
0 |
0.00 % |
0 |
0.00 % |
| LargeInsertSize |
0 |
0.00 % |
0 |
0.00 % |
| |
|
|
|
|
| NotCorrectlyAligned |
0 |
0.00 % |
0 |
0.00 % |
| Unmapped |
0 |
0.00 % |
0 |
0.00 % |
Base Level Counts
| Bases |
# |
% |
| Total |
24083504156 |
100% |
| Passed |
22027364301 |
91.46 % |
| Trimmed |
1140617648 |
4.74 % |
| Clipped |
671343857 |
2.79 % |
| Overlapping |
0 |
0.00 % |
| LowQuality |
244178350 |
1.01 % |
Coverage and Quality
| Coverage Distribution |
Quality Distribution |
 |
 |
| GC/Coverage Heatmap |
Non-CpG Read Profile |
 |
 |