/EXTERNAL CREST/methylation/K006476_1_lane_gembs

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SAMPLE K006476_1_lane_gembs




CpG counts

Type Total Pass %
RefCpG 24850541 3068535 12.35 %
NonRefCpG 488184 13158 2.70 %

Coverage CpGs




Coverage Reference CpGs Coverage Information Reads Reference CpGs
./IMG//K006476_1_lane_gembs_coverage_refCpG.png ./IMG//K006476_1_lane_gembs_coverage_refCpGInf.png



Coverage Non Reference CpGs Coverage Information Reads Non-Reference CpGs
./IMG//K006476_1_lane_gembs_coverage_nonRefCpG.png ./IMG//K006476_1_lane_gembs_coverage_nonRefCpGinf.png

Quality CpGs




Genotype Quality Phred scaled Reference CpGs Genotype Quality Phred scaled Non-Reference CpGs
./IMG//K006476_1_lane_gembs_quality_refcpg.png ./IMG//K006476_1_lane_gembs_quality_nonRefCpg.png

Methylation CpGs




CpGs Methylation Distribution
./IMG//K006476_1_lane_gembs_methylation_levels.png

CpG Methylation Profile (From Individual Strands)

Type #AllReferenceCpG % #PassedReferenceCpG % #AllNonReferenceCpG % #PassedNonReferenceCpG %
Unmethylated (0-0.3) 21621720 46.85 % 5051767 38.71 % 476577 54.89 % 40757 41.64 %
Intermediate (0.3-0.7) 15525574 33.64 % 4099843 31.42 % 276489 31.84 % 32501 33.20 %
Methylated (0.7-1) 9007687 19.52 % 3898953 29.88 % 115250 13.27 % 24621 25.15 %
Median Methylation 0.340 0.440 0.260 0.390