/Martin Hirst/PX1413_AGCATC_4_lane_gembs/H3MNNCCX2_6_2
BACK| Concept | Total Reads | % | Pair One Reads | % | Pair Two Reads | % |
|---|---|---|---|---|---|---|
| Sequenced Reads | 463594836 | 100.00 % | 231797418 | 100.00 % | 231797418 | 100.00 % |
| General Reads | 450127345 | 97.09 % | 226311294 | 97.63 % | 223816051 | 96.56 % |
| Reads in Control sequences | 0 | 0.00 % | 0 | 0.00 % | 0 | 0.00 % |
| Reads under conversion control | 2716301 | 0.59 % | 1372746 | 0.59 % | 1343555 | 0.58 % |
| Reads over conversion control | 0 | 0.00 % | 0 | 0.00 % | 0 | 0.00 % |
| Unmapped reads | 10751190 | 2.32 % | 4113378 | 1.77 % | 6637812 | 2.86 % |
| Bisulfite_reads C2T | 231108581 | 49.85 % | 116213375 | 50.14 % | 114895206 | 49.57 % |
| Bisulfite_reads G2A | 221735065 | 47.83 % | 111470665 | 48.09 % | 110264400 | 47.57 % |
| Concept | Value |
|---|---|
| Unique Fragments | 61169598 |
| Average Unique | 26.39 % |
| Concept | Total Bases | % | Pair One Bases | % | Pair Two Bases | % |
|---|---|---|---|---|---|---|
| Base Counts Overall A | 25678157669 | 36.68 % | 13891134140 | 39.69 % | 11787023529 | 33.68 % |
| Base Counts Overall C | 10419352761 | 14.88 % | 6272618421 | 17.92 % | 4146734340 | 11.85 % |
| Base Counts Overall G | 9678383041 | 13.83 % | 3831769082 | 10.95 % | 5846613959 | 16.70 % |
| Base Counts Overall T | 23753149292 | 33.93 % | 10770581511 | 30.77 % | 12982567781 | 37.09 % |
| Base Counts Overall N | 473777473 | 0.68 % | 235306964 | 0.67 % | 238470509 | 0.68 % |
| Bisulfite Conversion Type | Conversion Rate |
|---|---|
| Conversion Rate | 0.889535290671505 |
| Over Conversion Rate | NA |
| Concept | Total Reads |
|---|---|
| Correct Pairs | 111023728 |
| Mapping Quality Histogram |
|---|
| |
| Read Length | Reads |
|---|---|
| 150 | 231797418 |
| 150 | 231797418 |
| Insert Size Histogram |
|---|
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