/Martin Hirst/PX1413_AGCATC_4_lane_gembs/H77LNCCX2_1_2
BACK| Concept | Total Reads | % | Pair One Reads | % | Pair Two Reads | % |
|---|---|---|---|---|---|---|
| Sequenced Reads | 492107058 | 100.00 % | 246053529 | 100.00 % | 246053529 | 100.00 % |
| General Reads | 475371551 | 96.60 % | 240527941 | 97.75 % | 234843610 | 95.44 % |
| Reads in Control sequences | 0 | 0.00 % | 0 | 0.00 % | 0 | 0.00 % |
| Reads under conversion control | 2872841 | 0.58 % | 1465111 | 0.60 % | 1407730 | 0.57 % |
| Reads over conversion control | 0 | 0.00 % | 0 | 0.00 % | 0 | 0.00 % |
| Unmapped reads | 13862666 | 2.82 % | 4060477 | 1.65 % | 9802189 | 3.98 % |
| Bisulfite_reads C2T | 243862619 | 49.55 % | 123405346 | 50.15 % | 120457273 | 48.96 % |
| Bisulfite_reads G2A | 234381773 | 47.63 % | 118587706 | 48.20 % | 115794067 | 47.06 % |
| Concept | Value |
|---|---|
| Unique Fragments | 68662666 |
| Average Unique | 27.91 % |
| Concept | Total Bases | % | Pair One Bases | % | Pair Two Bases | % |
|---|---|---|---|---|---|---|
| Base Counts Overall A | 27290608324 | 36.73 % | 14928355647 | 40.18 % | 12362252677 | 33.27 % |
| Base Counts Overall C | 10830245571 | 14.57 % | 6676855683 | 17.97 % | 4153389888 | 11.18 % |
| Base Counts Overall G | 10176041478 | 13.69 % | 3861656194 | 10.39 % | 6314385284 | 17.00 % |
| Base Counts Overall T | 25511636429 | 34.33 % | 11437446193 | 30.78 % | 14074190236 | 37.88 % |
| Base Counts Overall N | 499633956 | 0.67 % | 249769162 | 0.67 % | 249864794 | 0.67 % |
| Bisulfite Conversion Type | Conversion Rate |
|---|---|
| Conversion Rate | 0.9049794141888919 |
| Over Conversion Rate | NA |
| Concept | Total Reads |
|---|---|
| Correct Pairs | 122556194 |
| Mapping Quality Histogram |
|---|
| |
| Read Length | Reads |
|---|---|
| 150 | 246053529 |
| 150 | 246053529 |
| Insert Size Histogram |
|---|
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