/Martin Hirst/PX1413_AGCATC_4_lane_gembs/H77LNCCX2_2_2
BACK| Concept | Total Reads | % | Pair One Reads | % | Pair Two Reads | % |
|---|---|---|---|---|---|---|
| Sequenced Reads | 484943492 | 100.00 % | 242471746 | 100.00 % | 242471746 | 100.00 % |
| General Reads | 468954837 | 96.70 % | 236976827 | 97.73 % | 231978010 | 95.67 % |
| Reads in Control sequences | 0 | 0.00 % | 0 | 0.00 % | 0 | 0.00 % |
| Reads under conversion control | 2828018 | 0.58 % | 1439552 | 0.59 % | 1388466 | 0.57 % |
| Reads over conversion control | 0 | 0.00 % | 0 | 0.00 % | 0 | 0.00 % |
| Unmapped reads | 13160637 | 2.71 % | 4055367 | 1.67 % | 9105270 | 3.76 % |
| Bisulfite_reads C2T | 240554799 | 49.60 % | 121574983 | 50.14 % | 118979816 | 49.07 % |
| Bisulfite_reads G2A | 231228056 | 47.68 % | 116841396 | 48.19 % | 114386660 | 47.18 % |
| Concept | Value |
|---|---|
| Unique Fragments | 67302698 |
| Average Unique | 27.76 % |
| Concept | Total Bases | % | Pair One Bases | % | Pair Two Bases | % |
|---|---|---|---|---|---|---|
| Base Counts Overall A | 26898862156 | 36.73 % | 14717293855 | 40.20 % | 12181568301 | 33.27 % |
| Base Counts Overall C | 10716524994 | 14.63 % | 6598438506 | 18.02 % | 4118086488 | 11.25 % |
| Base Counts Overall G | 10011650793 | 13.67 % | 3792095546 | 10.36 % | 6219555247 | 16.99 % |
| Base Counts Overall T | 25108827539 | 34.29 % | 11260727445 | 30.76 % | 13848100094 | 37.82 % |
| Base Counts Overall N | 490601810 | 0.67 % | 244678294 | 0.67 % | 245923516 | 0.67 % |
| Bisulfite Conversion Type | Conversion Rate |
|---|---|
| Conversion Rate | 0.9042958288944406 |
| Over Conversion Rate | NA |
| Concept | Total Reads |
|---|---|
| Correct Pairs | 120302470 |
| Mapping Quality Histogram |
|---|
| |
| Read Length | Reads |
|---|---|
| 150 | 242471746 |
| 150 | 242471746 |
| Insert Size Histogram |
|---|
 |