/Martin Hirst/PX1413_AGCATC_4_lane_gembs/H77LNCCX2_3_2
BACK| Concept | Total Reads | % | Pair One Reads | % | Pair Two Reads | % |
|---|---|---|---|---|---|---|
| Sequenced Reads | 493774050 | 100.00 % | 246887025 | 100.00 % | 246887025 | 100.00 % |
| General Reads | 477891124 | 96.78 % | 241278970 | 97.73 % | 236612154 | 95.84 % |
| Reads in Control sequences | 0 | 0.00 % | 0 | 0.00 % | 0 | 0.00 % |
| Reads under conversion control | 2877781 | 0.58 % | 1464193 | 0.59 % | 1413588 | 0.57 % |
| Reads over conversion control | 0 | 0.00 % | 0 | 0.00 % | 0 | 0.00 % |
| Unmapped reads | 13005145 | 2.63 % | 4143862 | 1.68 % | 8861283 | 3.59 % |
| Bisulfite_reads C2T | 245165843 | 49.65 % | 123794937 | 50.14 % | 121370906 | 49.16 % |
| Bisulfite_reads G2A | 235603062 | 47.71 % | 118948226 | 48.18 % | 116654836 | 47.25 % |
| Concept | Value |
|---|---|
| Unique Fragments | 68606073 |
| Average Unique | 27.79 % |
| Concept | Total Bases | % | Pair One Bases | % | Pair Two Bases | % |
|---|---|---|---|---|---|---|
| Base Counts Overall A | 27388130638 | 36.73 % | 14973486038 | 40.16 % | 12414644600 | 33.30 % |
| Base Counts Overall C | 10922017087 | 14.65 % | 6718197442 | 18.02 % | 4203819645 | 11.28 % |
| Base Counts Overall G | 10182129391 | 13.66 % | 3871096313 | 10.38 % | 6311033078 | 16.93 % |
| Base Counts Overall T | 25566700924 | 34.29 % | 11468219397 | 30.76 % | 14098481527 | 37.82 % |
| Base Counts Overall N | 500903510 | 0.67 % | 248941585 | 0.67 % | 251961925 | 0.68 % |
| Bisulfite Conversion Type | Conversion Rate |
|---|---|
| Conversion Rate | 0.9039050054349713 |
| Over Conversion Rate | NA |
| Concept | Total Reads |
|---|---|
| Correct Pairs | 122734037 |
| Mapping Quality Histogram |
|---|
| |
| Read Length | Reads |
|---|---|
| 150 | 246887025 |
| 150 | 246887025 |
| Insert Size Histogram |
|---|
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