/Martin Hirst/PX1413_AGCATC_4_lane_gembs

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SAMPLE PX1413_AGCATC_4_lane_gembs




Mapping Stats (Reads)

Concept Total Reads % Pair One Reads % Pair Two Reads %
Sequenced Reads 1934419436 100.00 % 967209718 100.00 % 967209718 100.00 %
General Reads 1872344857 96.79 % 945095032 97.71 % 927249825 95.87 %
Reads in Control sequences 0 0.00 % 0 0.00 % 0 0.00 %
Reads under conversion control 11294941 0.58 % 5741602 0.59 % 5553339 0.57 %
Reads over conversion control 0 0.00 % 0 0.00 % 0 0.00 %
Unmapped reads 50779638 2.63 % 16373084 1.69 % 34406554 3.56 %
Bisulfite_reads C2T 960691842 49.66 % 484988641 50.14 % 475703201 49.18 %
Bisulfite_reads G2A 922947956 47.71 % 465847993 48.16 % 457099963 47.26 %



Uniqueness (Fragments)

Concept Value
Unique Fragments 265741035
Average Unique 27.48 %



Mapping Stats (Bases)

Concept Total Bases % Pair One Bases % Pair Two Bases %
Base Counts Overall A 107255758787 36.72 % 58510269680 40.06 % 48745489107 33.38 %
Base Counts Overall C 42888140413 14.68 % 26266110052 17.98 % 16622030361 11.38 %
Base Counts Overall G 40048204703 13.71 % 15356617135 10.51 % 24691587568 16.91 %
Base Counts Overall T 99940314184 34.21 % 44936974546 30.77 % 55003339638 37.66 %
Base Counts Overall N 1964916749 0.67 % 978696005 0.67 % 986220744 0.68 %



Bisulfite Conversion Rate

Bisulfite Conversion Type Conversion Rate
Conversion Rate 0.9009807361385485
Over Conversion Rate NA



Correct Pairs

Concept Total Reads
Correct Pairs 476616429



Mapping Quality

Mapping Quality Histogram
PX1413_AGCATC_4_lane_gembs.mapq.png



Insert Size Plot

Insert Size Histogram
PX1413_AGCATC_4_lane_gembs.isize.png



Mapping Lanes Reports

LANE REPORTS
H77LNCCX2_2_2
H77LNCCX2_3_2
H3MNNCCX2_6_2
H77LNCCX2_1_2