/Martin Hirst/methylation/PX1413_AGCATC_4_lane_gembs
BACK
SAMPLE PX1413_AGCATC_4_lane_gembs
CpG counts
| Type |
Total |
Pass |
% |
| RefCpG |
24940875 |
16032071 |
64.28 % |
| NonRefCpG |
322440 |
37813 |
11.73 % |
Coverage CpGs
| Coverage Reference CpGs |
Coverage Information Reads Reference CpGs |
 |
 |
| Coverage Non Reference CpGs |
Coverage Information Reads Non-Reference CpGs |
 |
 |
Quality CpGs
| Genotype Quality Phred scaled Reference CpGs |
Genotype Quality Phred scaled Non-Reference CpGs |
 |
 |
Methylation CpGs
| CpGs Methylation Distribution |
 |
CpG Methylation Profile (From Individual Strands)
| Type |
#AllReferenceCpG |
% |
#PassedReferenceCpG |
% |
#AllNonReferenceCpG |
% |
#PassedNonReferenceCpG |
% |
| Unmethylated (0-0.3) |
4976942 |
10.24 % |
2617873 |
7.09 % |
252615 |
43.81 % |
42929 |
22.81 % |
| Intermediate (0.3-0.7) |
9355765 |
19.25 % |
5936754 |
16.08 % |
152239 |
26.40 % |
50393 |
26.78 % |
| Methylated (0.7-1) |
34272593 |
70.51 % |
28361762 |
76.83 % |
171713 |
29.78 % |
94875 |
50.41 % |
| |
|
|
|
|
|
|
|
|
| Median Methylation |
0.840 |
|
0.860 |
|
0.390 |
|
0.700 |
|