{
    "name": "Untitled", 
    "desc": "No description", 
    "flagstat_qc": [
        {
            "total": 112592374, 
            "total_qc_failed": 0, 
            "duplicates": 0, 
            "duplicates_qc_failed": 0, 
            "mapped": 110891644, 
            "mapped_qc_failed": 0, 
            "mapped_pct": 98.49, 
            "paired": 112592374, 
            "paired_qc_failed": 0, 
            "read1": 56296187, 
            "read1_qc_failed": 0, 
            "read2": 56296187, 
            "read2_qc_failed": 0, 
            "paired_properly": 92250626, 
            "paired_properly_qc_failed": 0, 
            "paired_properly_pct": 81.93, 
            "with_itself": 109915679, 
            "with_itself_qc_failed": 0, 
            "singletons": 975965, 
            "singletons_qc_failed": 0, 
            "singletons_pct": 0.87, 
            "diff_chroms": 15119716, 
            "diff_chroms_qc_failed": 0
        }
    ], 
    "ctl_flagstat_qc": [
        {
            "total": 112753966, 
            "total_qc_failed": 0, 
            "duplicates": 0, 
            "duplicates_qc_failed": 0, 
            "mapped": 109868487, 
            "mapped_qc_failed": 0, 
            "mapped_pct": 97.44, 
            "paired": 112753966, 
            "paired_qc_failed": 0, 
            "read1": 56376983, 
            "read1_qc_failed": 0, 
            "read2": 56376983, 
            "read2_qc_failed": 0, 
            "paired_properly": 87661066, 
            "paired_properly_qc_failed": 0, 
            "paired_properly_pct": 77.75, 
            "with_itself": 108182157, 
            "with_itself_qc_failed": 0, 
            "singletons": 1686330, 
            "singletons_qc_failed": 0, 
            "singletons_pct": 1.5, 
            "diff_chroms": 16951047, 
            "diff_chroms_qc_failed": 0
        }
    ], 
    "dup_qc": [
        {
            "unpaired_reads": 0, 
            "paired_reads": 41717593, 
            "unmapped_reads": 0, 
            "unpaired_dupes": 0, 
            "paired_dupes": 2228700, 
            "paired_opt_dupes": 2653, 
            "dupes_pct": 0.053424
        }
    ], 
    "ctl_dup_qc": [
        {
            "unpaired_reads": 0, 
            "paired_reads": 38372389, 
            "unmapped_reads": 0, 
            "unpaired_dupes": 0, 
            "paired_dupes": 558393, 
            "paired_opt_dupes": 2534, 
            "dupes_pct": 0.014552
        }
    ], 
    "pbc_qc": [
        {
            "total_read_pairs": 41412032, 
            "distinct_read_pairs": 39290537, 
            "one_read_pair": 37383941, 
            "two_read_pair": 1759471, 
            "NRF": 0.948771, 
            "PBC1": 0.951474, 
            "PBC2": 21.247262
        }
    ], 
    "ctl_pbc_qc": [
        {
            "total_read_pairs": 38298911, 
            "distinct_read_pairs": 37755269, 
            "one_read_pair": 37227219, 
            "two_read_pair": 517899, 
            "NRF": 0.985805, 
            "PBC1": 0.986014, 
            "PBC2": 71.881234
        }
    ], 
    "nodup_flagstat_qc": [
        {
            "total": 78977786, 
            "total_qc_failed": 0, 
            "duplicates": 0, 
            "duplicates_qc_failed": 0, 
            "mapped": 78977786, 
            "mapped_qc_failed": 0, 
            "mapped_pct": 100.0, 
            "paired": 78977786, 
            "paired_qc_failed": 0, 
            "read1": 39488893, 
            "read1_qc_failed": 0, 
            "read2": 39488893, 
            "read2_qc_failed": 0, 
            "paired_properly": 78977786, 
            "paired_properly_qc_failed": 0, 
            "paired_properly_pct": 100.0, 
            "with_itself": 78977786, 
            "with_itself_qc_failed": 0, 
            "singletons": 0, 
            "singletons_qc_failed": 0, 
            "singletons_pct": 0.0, 
            "diff_chroms": 0, 
            "diff_chroms_qc_failed": 0
        }
    ], 
    "ctl_nodup_flagstat_qc": [
        {
            "total": 75627992, 
            "total_qc_failed": 0, 
            "duplicates": 0, 
            "duplicates_qc_failed": 0, 
            "mapped": 75627992, 
            "mapped_qc_failed": 0, 
            "mapped_pct": 100.0, 
            "paired": 75627992, 
            "paired_qc_failed": 0, 
            "read1": 37813996, 
            "read1_qc_failed": 0, 
            "read2": 37813996, 
            "read2_qc_failed": 0, 
            "paired_properly": 75627992, 
            "paired_properly_qc_failed": 0, 
            "paired_properly_pct": 100.0, 
            "with_itself": 75627992, 
            "with_itself_qc_failed": 0, 
            "singletons": 0, 
            "singletons_qc_failed": 0, 
            "singletons_pct": 0.0, 
            "diff_chroms": 0, 
            "diff_chroms_qc_failed": 0
        }
    ], 
    "overlap_reproducibility_qc": {
        "Nt": 0, 
        "N1": 68138, 
        "Np": 0, 
        "N_opt": 68138, 
        "N_consv": 68138, 
        "opt_set": "rep1-pr", 
        "consv_set": "rep1-pr", 
        "rescue_ratio": 0.0, 
        "self_consistency_ratio": 1.0, 
        "reproducibility": "pass"
    }, 
    "xcor_score": [
        {
            "num_reads": 15000000, 
            "est_frag_len": 150, 
            "corr_est_frag_len": 0.19981881248712, 
            "phantom_peak": 50, 
            "corr_phantom_peak": 0.1814224, 
            "argmin_corr": 1500, 
            "min_corr": 0.1607204, 
            "NSC": 1.243269, 
            "RSC": 1.888632
        }
    ], 
    "frip_macs2_qc": {
        "rep1": {
            "FRiP": 0.274783327599
        }, 
        "rep1-pr1": {
            "FRiP": 0.283394210586
        }, 
        "rep1-pr2": {
            "FRiP": 0.283572054095
        }
    }, 
    "overlap_frip_qc": {
        "rep1-pr": {
            "FRiP": 0.261320238509
        }
    }, 
    "jsd_qc": [
        {
            "pct_gen_enrich": 0.248306638687, 
            "auc": 0.495432264241, 
            "ch_div": 0.105523378443, 
            "elbow_pt": 0.0, 
            "jsd": 0.712211330653, 
            "syn_auc": 0.502507506011, 
            "syn_elbow_pt": 0.257449073702, 
            "syn_jsd": 0.365974981867
        }
    ]
}
