/CEMT/mapping_coverage/E00610_8_lane_gembs
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SAMPLE E00610_8_lane_gembs
Read Level Counts
| Type |
#reads |
% |
#bases |
% |
| Total |
1703245158 |
100% |
234264895333 |
100% |
| Mapped |
1674827403 |
98.33 % |
230002232083 |
98.18 % |
| Passed |
507198384 |
29.78 % |
54857879233 |
23.42 % |
| NotPassed |
1167629019 |
68.55 % |
175144352850 |
74.76 % |
| |
|
|
|
|
| LowMAPQ |
822119600 |
48.27 % |
123317940000 |
52.64 % |
| MateUnmapped |
28417755 |
1.67 % |
4262663250 |
1.82 % |
| Duplicate |
32839409 |
1.93 % |
4925911350 |
2.10 % |
| BadOrientation |
0 |
0.00 % |
0 |
0.00 % |
| LargeInsertSize |
2495106 |
0.15 % |
374265900 |
0.16 % |
| |
|
|
|
|
| NotCorrectlyAligned |
310174904 |
18.21 % |
46526235600 |
19.86 % |
| Unmapped |
28417755 |
1.67 % |
4262663250 |
1.82 % |
Base Level Counts
| Bases |
# |
% |
| Total |
75975213300 |
100% |
| Passed |
50968373336 |
67.09 % |
| Trimmed |
1803443823 |
2.37 % |
| Clipped |
5008309125 |
6.59 % |
| Overlapping |
16109024942 |
21.20 % |
| LowQuality |
2086062074 |
2.75 % |
Coverage and Quality
| Coverage Distribution |
Quality Distribution |
 |
 |
| GC/Coverage Heatmap |
Non-CpG Read Profile |
 |
 |