/CEMT/methylation/E00610_8_lane_gembs

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SAMPLE E00610_8_lane_gembs




CpG counts

Type Total Pass %
RefCpG 26063578 18703148 71.76 %
NonRefCpG 431405 115680 26.81 %

Coverage CpGs




Coverage Reference CpGs Coverage Information Reads Reference CpGs
./IMG//E00610_8_lane_gembs_coverage_refCpG.png ./IMG//E00610_8_lane_gembs_coverage_refCpGInf.png



Coverage Non Reference CpGs Coverage Information Reads Non-Reference CpGs
./IMG//E00610_8_lane_gembs_coverage_nonRefCpG.png ./IMG//E00610_8_lane_gembs_coverage_nonRefCpGinf.png

Quality CpGs




Genotype Quality Phred scaled Reference CpGs Genotype Quality Phred scaled Non-Reference CpGs
./IMG//E00610_8_lane_gembs_quality_refcpg.png ./IMG//E00610_8_lane_gembs_quality_nonRefCpg.png

Methylation CpGs




CpGs Methylation Distribution
./IMG//E00610_8_lane_gembs_methylation_levels.png

CpG Methylation Profile (From Individual Strands)

Type #AllReferenceCpG % #PassedReferenceCpG % #AllNonReferenceCpG % #PassedNonReferenceCpG %
Unmethylated (0-0.3) 8100412 16.04 % 6255402 15.32 % 232471 30.78 % 42535 13.22 %
Intermediate (0.3-0.7) 9593758 19.00 % 6331131 15.51 % 191981 25.42 % 61993 19.26 %
Methylated (0.7-1) 32803147 64.96 % 28245556 69.17 % 330814 43.80 % 217312 67.52 %
Median Methylation 0.820 0.840 0.610 0.830