/CEMT/mapping_coverage/E00612_8_lane_gembs
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SAMPLE E00612_8_lane_gembs
Read Level Counts
| Type |
#reads |
% |
#bases |
% |
| Total |
1778025509 |
100% |
245598185383 |
100% |
| Mapped |
1747170429 |
98.26 % |
240969923383 |
98.12 % |
| Passed |
527427216 |
29.66 % |
58008441433 |
23.62 % |
| NotPassed |
1219743213 |
68.60 % |
182961481950 |
74.50 % |
| |
|
|
|
|
| LowMAPQ |
849824554 |
47.80 % |
127473683100 |
51.90 % |
| MateUnmapped |
30855080 |
1.74 % |
4628262000 |
1.88 % |
| Duplicate |
33614364 |
1.89 % |
5042154600 |
2.05 % |
| BadOrientation |
0 |
0.00 % |
0 |
0.00 % |
| LargeInsertSize |
3675844 |
0.21 % |
551376600 |
0.22 % |
| |
|
|
|
|
| NotCorrectlyAligned |
332628451 |
18.71 % |
49894267650 |
20.32 % |
| Unmapped |
30855080 |
1.74 % |
4628262000 |
1.88 % |
Base Level Counts
| Bases |
# |
% |
| Total |
79012980450 |
100% |
| Passed |
53914365250 |
68.23 % |
| Trimmed |
1901282137 |
2.41 % |
| Clipped |
5287296396 |
6.69 % |
| Overlapping |
15717242621 |
19.89 % |
| LowQuality |
2192794046 |
2.78 % |
Coverage and Quality
| Coverage Distribution |
Quality Distribution |
 |
 |
| GC/Coverage Heatmap |
Non-CpG Read Profile |
 |
 |