/CEMT/methylation/E00612_8_lane_gembs

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SAMPLE E00612_8_lane_gembs




CpG counts

Type Total Pass %
RefCpG 26076033 18442198 70.72 %
NonRefCpG 380899 112093 29.43 %

Coverage CpGs




Coverage Reference CpGs Coverage Information Reads Reference CpGs
./IMG//E00612_8_lane_gembs_coverage_refCpG.png ./IMG//E00612_8_lane_gembs_coverage_refCpGInf.png



Coverage Non Reference CpGs Coverage Information Reads Non-Reference CpGs
./IMG//E00612_8_lane_gembs_coverage_nonRefCpG.png ./IMG//E00612_8_lane_gembs_coverage_nonRefCpGinf.png

Quality CpGs




Genotype Quality Phred scaled Reference CpGs Genotype Quality Phred scaled Non-Reference CpGs
./IMG//E00612_8_lane_gembs_quality_refcpg.png ./IMG//E00612_8_lane_gembs_quality_nonRefCpg.png

Methylation CpGs




CpGs Methylation Distribution
./IMG//E00612_8_lane_gembs_methylation_levels.png

CpG Methylation Profile (From Individual Strands)

Type #AllReferenceCpG % #PassedReferenceCpG % #AllNonReferenceCpG % #PassedNonReferenceCpG %
Unmethylated (0-0.3) 8380438 16.48 % 6464035 15.78 % 194825 28.67 % 38824 12.50 %
Intermediate (0.3-0.7) 12770858 25.11 % 8867742 21.65 % 194054 28.56 % 75563 24.33 %
Methylated (0.7-1) 29698324 58.40 % 25618946 62.56 % 290692 42.78 % 196224 63.17 %
Median Methylation 0.760 0.790 0.610 0.790