/CEMT/mapping_coverage/B04745_2_lane_gembs
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SAMPLE B04745_2_lane_gembs
Read Level Counts
| Type |
#reads |
% |
#bases |
% |
| Total |
1284975331 |
100% |
174343800421 |
100% |
| Mapped |
1273226703 |
99.09 % |
172581506221 |
98.99 % |
| Passed |
842288087 |
65.55 % |
107940713821 |
61.91 % |
| NotPassed |
430938616 |
33.54 % |
64640792400 |
37.08 % |
| |
|
|
|
|
| LowMAPQ |
179338174 |
13.96 % |
26900726100 |
15.43 % |
| MateUnmapped |
11748628 |
0.91 % |
1762294200 |
1.01 % |
| Duplicate |
222258059 |
17.30 % |
33338708850 |
19.12 % |
| BadOrientation |
256 |
0.00 % |
38400 |
0.00 % |
| LargeInsertSize |
27760 |
0.00 % |
4164000 |
0.00 % |
| |
|
|
|
|
| NotCorrectlyAligned |
29314367 |
2.28 % |
4397155050 |
2.52 % |
| Unmapped |
11748628 |
0.91 % |
1762294200 |
1.01 % |
Base Level Counts
| Bases |
# |
% |
| Total |
126326036400 |
100% |
| Passed |
101027887271 |
79.97 % |
| Trimmed |
3720833610 |
2.95 % |
| Clipped |
299798027 |
0.24 % |
| Overlapping |
18085524552 |
14.32 % |
| LowQuality |
3191992940 |
2.53 % |
Coverage and Quality
| Coverage Distribution |
Quality Distribution |
 |
 |
| GC/Coverage Heatmap |
Non-CpG Read Profile |
 |
 |