/CEMT/methylation/B04745_2_lane_gembs

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SAMPLE B04745_2_lane_gembs




CpG counts

Type Total Pass %
RefCpG 27078555 20217000 74.66 %
NonRefCpG 297003 179291 60.37 %

Coverage CpGs




Coverage Reference CpGs Coverage Information Reads Reference CpGs
./IMG//B04745_2_lane_gembs_coverage_refCpG.png ./IMG//B04745_2_lane_gembs_coverage_refCpGInf.png



Coverage Non Reference CpGs Coverage Information Reads Non-Reference CpGs
./IMG//B04745_2_lane_gembs_coverage_nonRefCpG.png ./IMG//B04745_2_lane_gembs_coverage_nonRefCpGinf.png

Quality CpGs




Genotype Quality Phred scaled Reference CpGs Genotype Quality Phred scaled Non-Reference CpGs
./IMG//B04745_2_lane_gembs_quality_refcpg.png ./IMG//B04745_2_lane_gembs_quality_nonRefCpg.png

Methylation CpGs




CpGs Methylation Distribution
./IMG//B04745_2_lane_gembs_methylation_levels.png

CpG Methylation Profile (From Individual Strands)

Type #AllReferenceCpG % #PassedReferenceCpG % #AllNonReferenceCpG % #PassedNonReferenceCpG %
Unmethylated (0-0.3) 5646392 10.74 % 2014080 4.72 % 81669 14.62 % 22762 5.66 %
Intermediate (0.3-0.7) 9012570 17.15 % 5934683 13.91 % 105153 18.82 % 57439 14.28 %
Methylated (0.7-1) 37905581 72.11 % 34727231 81.37 % 371894 66.56 % 322068 80.06 %
Median Methylation 0.860 0.890 0.840 0.890