/CEMT/mapping_coverage/B19818_2_lane_gembs
BACK
SAMPLE B19818_2_lane_gembs
Read Level Counts
| Type |
#reads |
% |
#bases |
% |
| Total |
1836346046 |
100% |
226765677360 |
100% |
| Mapped |
1824603151 |
99.36 % |
225004243110 |
99.22 % |
| Passed |
1464844947 |
79.77 % |
171040512510 |
75.43 % |
| NotPassed |
359758204 |
19.59 % |
53963730600 |
23.80 % |
| |
|
|
|
|
| LowMAPQ |
247172850 |
13.46 % |
37075927500 |
16.35 % |
| MateUnmapped |
11742895 |
0.64 % |
1761434250 |
0.78 % |
| Duplicate |
91609649 |
4.99 % |
13741447350 |
6.06 % |
| BadOrientation |
194 |
0.00 % |
29100 |
0.00 % |
| LargeInsertSize |
40274 |
0.00 % |
6041100 |
0.00 % |
| |
|
|
|
|
| NotCorrectlyAligned |
20935237 |
1.14 % |
3140285550 |
1.38 % |
| Unmapped |
11742895 |
0.64 % |
1761434250 |
0.78 % |
Base Level Counts
| Bases |
# |
% |
| Total |
219711760650 |
100% |
| Passed |
160962312881 |
73.26 % |
| Trimmed |
6259781132 |
2.85 % |
| Clipped |
375144963 |
0.17 % |
| Overlapping |
48296103177 |
21.98 % |
| LowQuality |
3818418497 |
1.74 % |
Coverage and Quality
| Coverage Distribution |
Quality Distribution |
 |
 |
| GC/Coverage Heatmap |
Non-CpG Read Profile |
 |
 |