/CEMT/B19819_2_lane_gembs/HYYJWCCXY_1_2

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SAMPLE B19819_2_lane_gembs LANE HYYJWCCXY_1_2

Mapping Stats (Reads)

Concept Total Reads % Pair One Reads % Pair Two Reads %
Sequenced Reads 983779774 100.00 % 491889887 100.00 % 491889887 100.00 %
General Reads 971468466 98.75 % 489776469 99.57 % 481691997 97.93 %
Reads in Control sequences 0 0.00 % 0 0.00 % 0 0.00 %
Reads under conversion control 283461 0.03 % 142784 0.03 % 140677 0.03 %
Reads over conversion control 0 0.00 % 0 0.00 % 0 0.00 %
Unmapped reads 12027847 1.22 % 1970634 0.40 % 10057213 2.04 %
Bisulfite_reads C2T 497953641 50.62 % 250913786 51.01 % 247039855 50.22 %
Bisulfite_reads G2A 473798286 48.16 % 239005467 48.59 % 234792819 47.73 %



Uniqueness (Fragments)

Concept Value
Unique Fragments 418107162
Average Unique 85.00 %



Mapping Stats (Bases)

Concept Total Bases % Pair One Bases % Pair Two Bases %
Base Counts Overall A 56633654883 38.12 % 22578106650 30.40 % 34055548233 45.85 %
Base Counts Overall C 17026845632 11.46 % 864043524 1.16 % 16162802108 21.76 %
Base Counts Overall G 16827477622 11.33 % 16017782768 21.57 % 809694854 1.09 %
Base Counts Overall T 57064174912 38.41 % 34314784282 46.20 % 22749390630 30.63 %
Base Counts Overall N 998592825 0.67 % 500655713 0.67 % 497937112 0.67 %



Bisulfite Conversion Rate

Bisulfite Conversion Type Conversion Rate
Conversion Rate 0.9958646932405428
Over Conversion Rate NA



Correct Pairs

Concept Total Reads
Correct Pairs 468648665



Mapping Quality

Mapping Quality Histogram
HYYJWCCXY_1_2.mapq.png



Read Length

Read Length Reads
150 491889887
150 491889887



Insert Size Plot

Insert Size Histogram
HYYJWCCXY_1_2.isize.png