/CEMT/B19819_2_lane_gembs/HYYJWCCXY_2_2

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SAMPLE B19819_2_lane_gembs LANE HYYJWCCXY_2_2

Mapping Stats (Reads)

Concept Total Reads % Pair One Reads % Pair Two Reads %
Sequenced Reads 998474460 100.00 % 499237230 100.00 % 499237230 100.00 %
General Reads 990574817 99.21 % 497127353 99.58 % 493447464 98.84 %
Reads in Control sequences 0 0.00 % 0 0.00 % 0 0.00 %
Reads under conversion control 291285 0.03 % 146176 0.03 % 145109 0.03 %
Reads over conversion control 0 0.00 % 0 0.00 % 0 0.00 %
Unmapped reads 7608358 0.76 % 1963701 0.39 % 5644657 1.13 %
Bisulfite_reads C2T 507850331 50.86 % 254740225 51.03 % 253110106 50.70 %
Bisulfite_reads G2A 483015771 48.38 % 242533304 48.58 % 240482467 48.17 %



Uniqueness (Fragments)

Concept Value
Unique Fragments 429127900
Average Unique 85.96 %



Mapping Stats (Bases)

Concept Total Bases % Pair One Bases % Pair Two Bases %
Base Counts Overall A 57642028071 38.23 % 22957214481 30.45 % 34684813590 46.01 %
Base Counts Overall C 17147922871 11.37 % 744137212 0.99 % 16403785659 21.76 %
Base Counts Overall G 17038345786 11.30 % 16297185699 21.62 % 741160087 0.98 %
Base Counts Overall T 57929416163 38.42 % 34880485448 46.27 % 23048930715 30.58 %
Base Counts Overall N 1011930569 0.67 % 505798890 0.67 % 506131679 0.67 %



Bisulfite Conversion Rate

Bisulfite Conversion Type Conversion Rate
Conversion Rate 0.9960099526581588
Over Conversion Rate NA



Correct Pairs

Concept Total Reads
Correct Pairs 480620681



Mapping Quality

Mapping Quality Histogram
HYYJWCCXY_2_2.mapq.png



Read Length

Read Length Reads
150 499237230
150 499237230



Insert Size Plot

Insert Size Histogram
HYYJWCCXY_2_2.isize.png