/CEMT/mapping_coverage/B19819_2_lane_gembs
BACK
SAMPLE B19819_2_lane_gembs
Read Level Counts
| Type |
#reads |
% |
#bases |
% |
| Total |
1864314855 |
100% |
233119094882 |
100% |
| Mapped |
1848784158 |
99.17 % |
230789490332 |
99.00 % |
| Passed |
1505571132 |
80.76 % |
179307536432 |
76.92 % |
| NotPassed |
343213026 |
18.41 % |
51481953900 |
22.08 % |
| |
|
|
|
|
| LowMAPQ |
225353172 |
12.09 % |
33802975800 |
14.50 % |
| MateUnmapped |
15530697 |
0.83 % |
2329604550 |
1.00 % |
| Duplicate |
98002740 |
5.26 % |
14700411000 |
6.31 % |
| BadOrientation |
160 |
0.00 % |
24000 |
0.00 % |
| LargeInsertSize |
24730 |
0.00 % |
3709500 |
0.00 % |
| |
|
|
|
|
| NotCorrectlyAligned |
19832224 |
1.06 % |
2974833600 |
1.28 % |
| Unmapped |
15530697 |
0.83 % |
2329604550 |
1.00 % |
Base Level Counts
| Bases |
# |
% |
| Total |
225822426450 |
100% |
| Passed |
168479450013 |
74.61 % |
| Trimmed |
6502526805 |
2.88 % |
| Clipped |
381652066 |
0.17 % |
| Overlapping |
46133237952 |
20.43 % |
| LowQuality |
4325559614 |
1.92 % |
Coverage and Quality
| Coverage Distribution |
Quality Distribution |
 |
 |
| GC/Coverage Heatmap |
Non-CpG Read Profile |
 |
 |