/CEMT/methylation/B19819_2_lane_gembs

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SAMPLE B19819_2_lane_gembs




CpG counts

Type Total Pass %
RefCpG 27279291 25602879 93.85 %
NonRefCpG 273775 214171 78.23 %

Coverage CpGs




Coverage Reference CpGs Coverage Information Reads Reference CpGs
./IMG//B19819_2_lane_gembs_coverage_refCpG.png ./IMG//B19819_2_lane_gembs_coverage_refCpGInf.png



Coverage Non Reference CpGs Coverage Information Reads Non-Reference CpGs
./IMG//B19819_2_lane_gembs_coverage_nonRefCpG.png ./IMG//B19819_2_lane_gembs_coverage_nonRefCpGinf.png

Quality CpGs




Genotype Quality Phred scaled Reference CpGs Genotype Quality Phred scaled Non-Reference CpGs
./IMG//B19819_2_lane_gembs_quality_refcpg.png ./IMG//B19819_2_lane_gembs_quality_nonRefCpg.png

Methylation CpGs




CpGs Methylation Distribution
./IMG//B19819_2_lane_gembs_methylation_levels.png

CpG Methylation Profile (From Individual Strands)

Type #AllReferenceCpG % #PassedReferenceCpG % #AllNonReferenceCpG % #PassedNonReferenceCpG %
Unmethylated (0-0.3) 6642918 12.36 % 5964326 11.53 % 55995 10.81 % 31265 7.03 %
Intermediate (0.3-0.7) 7643780 14.22 % 7014779 13.56 % 86630 16.72 % 63290 14.24 %
Methylated (0.7-1) 39469443 73.42 % 38741922 74.91 % 375430 72.47 % 350038 78.73 %
Median Methylation 0.870 0.880 0.870 0.890