/CEMT/mapping_coverage/A95334_2_lane_gembs
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SAMPLE A95334_2_lane_gembs
Read Level Counts
| Type |
#reads |
% |
#bases |
% |
| Total |
1837519474 |
100% |
243693347429 |
100% |
| Mapped |
1819998532 |
99.05 % |
241065206129 |
98.92 % |
| Passed |
1375699025 |
74.87 % |
174420280079 |
71.57 % |
| NotPassed |
444299507 |
24.18 % |
66644926050 |
27.35 % |
| |
|
|
|
|
| LowMAPQ |
268250522 |
14.60 % |
40237578300 |
16.51 % |
| MateUnmapped |
17520942 |
0.95 % |
2628141300 |
1.08 % |
| Duplicate |
126449112 |
6.88 % |
18967366800 |
7.78 % |
| BadOrientation |
356 |
0.00 % |
53400 |
0.00 % |
| LargeInsertSize |
127430 |
0.01 % |
19114500 |
0.01 % |
| |
|
|
|
|
| NotCorrectlyAligned |
49472087 |
2.69 % |
7420813050 |
3.05 % |
| Unmapped |
17520942 |
0.95 % |
2628141300 |
1.08 % |
Base Level Counts
| Bases |
# |
% |
| Total |
206335419150 |
100% |
| Passed |
162979518297 |
78.99 % |
| Trimmed |
6080784801 |
2.95 % |
| Clipped |
476065158 |
0.23 % |
| Overlapping |
31439073913 |
15.24 % |
| LowQuality |
5359976981 |
2.60 % |
Coverage and Quality
| Coverage Distribution |
Quality Distribution |
 |
 |
| GC/Coverage Heatmap |
Non-CpG Read Profile |
 |
 |