/CEMT/methylation/A95334_2_lane_gembs

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SAMPLE A95334_2_lane_gembs




CpG counts

Type Total Pass %
RefCpG 27175211 22902009 84.28 %
NonRefCpG 263871 198436 75.20 %

Coverage CpGs




Coverage Reference CpGs Coverage Information Reads Reference CpGs
./IMG//A95334_2_lane_gembs_coverage_refCpG.png ./IMG//A95334_2_lane_gembs_coverage_refCpGInf.png



Coverage Non Reference CpGs Coverage Information Reads Non-Reference CpGs
./IMG//A95334_2_lane_gembs_coverage_nonRefCpG.png ./IMG//A95334_2_lane_gembs_coverage_nonRefCpGinf.png

Quality CpGs




Genotype Quality Phred scaled Reference CpGs Genotype Quality Phred scaled Non-Reference CpGs
./IMG//A95334_2_lane_gembs_quality_refcpg.png ./IMG//A95334_2_lane_gembs_quality_nonRefCpg.png

Methylation CpGs




CpGs Methylation Distribution
./IMG//A95334_2_lane_gembs_methylation_levels.png

CpG Methylation Profile (From Individual Strands)

Type #AllReferenceCpG % #PassedReferenceCpG % #AllNonReferenceCpG % #PassedNonReferenceCpG %
Unmethylated (0-0.3) 7058972 13.13 % 4545906 9.41 % 52965 10.53 % 27645 6.58 %
Intermediate (0.3-0.7) 11160295 20.77 % 9542347 19.76 % 112612 22.40 % 84342 20.08 %
Methylated (0.7-1) 35526187 66.10 % 34213405 70.83 % 337262 67.07 % 308054 73.34 %
Median Methylation 0.820 0.840 0.820 0.850