/CEMT/methylation/B35054_1_lane_gembs

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SAMPLE B35054_1_lane_gembs




CpG counts

Type Total Pass %
RefCpG 27087481 22357378 82.54 %
NonRefCpG 265844 196233 73.82 %

Coverage CpGs




Coverage Reference CpGs Coverage Information Reads Reference CpGs
./IMG//B35054_1_lane_gembs_coverage_refCpG.png ./IMG//B35054_1_lane_gembs_coverage_refCpGInf.png



Coverage Non Reference CpGs Coverage Information Reads Non-Reference CpGs
./IMG//B35054_1_lane_gembs_coverage_nonRefCpG.png ./IMG//B35054_1_lane_gembs_coverage_nonRefCpGinf.png

Quality CpGs




Genotype Quality Phred scaled Reference CpGs Genotype Quality Phred scaled Non-Reference CpGs
./IMG//B35054_1_lane_gembs_quality_refcpg.png ./IMG//B35054_1_lane_gembs_quality_nonRefCpg.png

Methylation CpGs




CpGs Methylation Distribution
./IMG//B35054_1_lane_gembs_methylation_levels.png

CpG Methylation Profile (From Individual Strands)

Type #AllReferenceCpG % #PassedReferenceCpG % #AllNonReferenceCpG % #PassedNonReferenceCpG %
Unmethylated (0-0.3) 6151999 11.51 % 3126863 6.68 % 48146 9.53 % 19126 4.62 %
Intermediate (0.3-0.7) 8246184 15.43 % 6346880 13.55 % 83458 16.51 % 53940 13.04 %
Methylated (0.7-1) 39036087 73.05 % 37351692 79.77 % 373805 73.96 % 340635 82.34 %
Median Methylation 0.860 0.890 0.870 0.890