/CEMT/methylation/E00609_8_lane_gembs

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SAMPLE E00609_8_lane_gembs




CpG counts

Type Total Pass %
RefCpG 26147195 19569870 74.85 %
NonRefCpG 411783 125050 30.37 %

Coverage CpGs




Coverage Reference CpGs Coverage Information Reads Reference CpGs
./IMG//E00609_8_lane_gembs_coverage_refCpG.png ./IMG//E00609_8_lane_gembs_coverage_refCpGInf.png



Coverage Non Reference CpGs Coverage Information Reads Non-Reference CpGs
./IMG//E00609_8_lane_gembs_coverage_nonRefCpG.png ./IMG//E00609_8_lane_gembs_coverage_nonRefCpGinf.png

Quality CpGs




Genotype Quality Phred scaled Reference CpGs Genotype Quality Phred scaled Non-Reference CpGs
./IMG//E00609_8_lane_gembs_quality_refcpg.png ./IMG//E00609_8_lane_gembs_quality_nonRefCpg.png

Methylation CpGs




CpGs Methylation Distribution
./IMG//E00609_8_lane_gembs_methylation_levels.png

CpG Methylation Profile (From Individual Strands)

Type #AllReferenceCpG % #PassedReferenceCpG % #AllNonReferenceCpG % #PassedNonReferenceCpG %
Unmethylated (0-0.3) 7090406 13.95 % 5731306 13.59 % 202841 27.93 % 36882 11.01 %
Intermediate (0.3-0.7) 8284235 16.30 % 5575866 13.22 % 170205 23.43 % 55959 16.71 %
Methylated (0.7-1) 35448992 69.75 % 30880223 73.20 % 353252 48.64 % 242047 72.28 %
Median Methylation 0.850 0.860 0.680 0.860