/CEMT/methylation/E00611_8_lane_gembs

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SAMPLE E00611_8_lane_gembs




CpG counts

Type Total Pass %
RefCpG 25886498 17733895 68.51 %
NonRefCpG 426977 107466 25.17 %

Coverage CpGs




Coverage Reference CpGs Coverage Information Reads Reference CpGs
./IMG//E00611_8_lane_gembs_coverage_refCpG.png ./IMG//E00611_8_lane_gembs_coverage_refCpGInf.png



Coverage Non Reference CpGs Coverage Information Reads Non-Reference CpGs
./IMG//E00611_8_lane_gembs_coverage_nonRefCpG.png ./IMG//E00611_8_lane_gembs_coverage_nonRefCpGinf.png

Quality CpGs




Genotype Quality Phred scaled Reference CpGs Genotype Quality Phred scaled Non-Reference CpGs
./IMG//E00611_8_lane_gembs_quality_refcpg.png ./IMG//E00611_8_lane_gembs_quality_nonRefCpg.png

Methylation CpGs




CpGs Methylation Distribution
./IMG//E00611_8_lane_gembs_methylation_levels.png

CpG Methylation Profile (From Individual Strands)

Type #AllReferenceCpG % #PassedReferenceCpG % #AllNonReferenceCpG % #PassedNonReferenceCpG %
Unmethylated (0-0.3) 8168886 16.31 % 6096073 15.49 % 232294 31.04 % 40803 13.33 %
Intermediate (0.3-0.7) 10695546 21.35 % 6866912 17.45 % 201541 26.93 % 65412 21.37 %
Methylated (0.7-1) 31220640 62.34 % 26384378 67.06 % 314559 42.03 % 199848 65.30 %
Median Methylation 0.800 0.830 0.590 0.820