/CEMT/A95336_2_lane_gembs/HYCCLCCXY_1_2

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SAMPLE A95336_2_lane_gembs LANE HYCCLCCXY_1_2

Mapping Stats (Reads)

Concept Total Reads % Pair One Reads % Pair Two Reads %
Sequenced Reads 911843548 100.00 % 455921774 100.00 % 455921774 100.00 %
General Reads 902739819 99.00 % 453085939 99.38 % 449653880 98.63 %
Reads in Control sequences 0 0.00 % 0 0.00 % 0 0.00 %
Reads under conversion control 246289 0.03 % 123594 0.03 % 122695 0.03 %
Reads over conversion control 0 0.00 % 0 0.00 % 0 0.00 %
Unmapped reads 8857440 0.97 % 2712241 0.59 % 6145199 1.35 %
Bisulfite_reads C2T 460389684 50.49 % 230954585 50.66 % 229435099 50.32 %
Bisulfite_reads G2A 442596424 48.54 % 222254948 48.75 % 220341476 48.33 %



Uniqueness (Fragments)

Concept Value
Unique Fragments 392530476
Average Unique 86.10 %



Mapping Stats (Bases)

Concept Total Bases % Pair One Bases % Pair Two Bases %
Base Counts Overall A 52863557352 38.39 % 21191530596 30.78 % 31672026756 46.01 %
Base Counts Overall C 15311069832 11.12 % 671069733 0.97 % 14640000099 21.27 %
Base Counts Overall G 15423556850 11.20 % 14667059684 21.30 % 756497166 1.10 %
Base Counts Overall T 53160325554 38.61 % 31851685840 46.27 % 21308639714 30.95 %
Base Counts Overall N 929866160 0.68 % 462842021 0.67 % 467024139 0.68 %



Bisulfite Conversion Rate

Bisulfite Conversion Type Conversion Rate
Conversion Rate 0.995895969413119
Over Conversion Rate NA



Correct Pairs

Concept Total Reads
Correct Pairs 438180030



Mapping Quality

Mapping Quality Histogram
HYCCLCCXY_1_2.mapq.png



Read Length

Read Length Reads
150 455921774
150 455921774



Insert Size Plot

Insert Size Histogram
HYCCLCCXY_1_2.isize.png