/CEMT/mapping_coverage/A95336_2_lane_gembs
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SAMPLE A95336_2_lane_gembs
Read Level Counts
| Type |
#reads |
% |
#bases |
% |
| Total |
1712404516 |
100% |
218741226783 |
100% |
| Mapped |
1699891941 |
99.27 % |
216864340533 |
99.14 % |
| Passed |
1383578679 |
80.80 % |
169417351233 |
77.45 % |
| NotPassed |
316313262 |
18.47 % |
47446989300 |
21.69 % |
| |
|
|
|
|
| LowMAPQ |
198673766 |
11.60 % |
29801064900 |
13.62 % |
| MateUnmapped |
12512575 |
0.73 % |
1876886250 |
0.86 % |
| Duplicate |
99316100 |
5.80 % |
14897415000 |
6.81 % |
| BadOrientation |
140 |
0.00 % |
21000 |
0.00 % |
| LargeInsertSize |
19368 |
0.00 % |
2905200 |
0.00 % |
| |
|
|
|
|
| NotCorrectlyAligned |
18303888 |
1.07 % |
2745583200 |
1.26 % |
| Unmapped |
12512575 |
0.73 % |
1876886250 |
0.86 % |
Base Level Counts
| Bases |
# |
% |
| Total |
207524282250 |
100% |
| Passed |
159015482547 |
76.63 % |
| Trimmed |
6019611641 |
2.90 % |
| Clipped |
351651197 |
0.17 % |
| Overlapping |
37755279820 |
18.19 % |
| LowQuality |
4382257045 |
2.11 % |
Coverage and Quality
| Coverage Distribution |
Quality Distribution |
 |
 |
| GC/Coverage Heatmap |
Non-CpG Read Profile |
 |
 |