/CEMT/methylation/A95336_2_lane_gembs

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SAMPLE A95336_2_lane_gembs




CpG counts

Type Total Pass %
RefCpG 27267311 25368400 93.04 %
NonRefCpG 270879 212064 78.29 %

Coverage CpGs




Coverage Reference CpGs Coverage Information Reads Reference CpGs
./IMG//A95336_2_lane_gembs_coverage_refCpG.png ./IMG//A95336_2_lane_gembs_coverage_refCpGInf.png



Coverage Non Reference CpGs Coverage Information Reads Non-Reference CpGs
./IMG//A95336_2_lane_gembs_coverage_nonRefCpG.png ./IMG//A95336_2_lane_gembs_coverage_nonRefCpGinf.png

Quality CpGs




Genotype Quality Phred scaled Reference CpGs Genotype Quality Phred scaled Non-Reference CpGs
./IMG//A95336_2_lane_gembs_quality_refcpg.png ./IMG//A95336_2_lane_gembs_quality_nonRefCpg.png

Methylation CpGs




CpGs Methylation Distribution
./IMG//A95336_2_lane_gembs_methylation_levels.png

CpG Methylation Profile (From Individual Strands)

Type #AllReferenceCpG % #PassedReferenceCpG % #AllNonReferenceCpG % #PassedNonReferenceCpG %
Unmethylated (0-0.3) 7253941 13.48 % 6378070 12.38 % 61100 11.89 % 36269 8.24 %
Intermediate (0.3-0.7) 7805370 14.50 % 7133558 13.84 % 86993 16.93 % 63818 14.49 %
Methylated (0.7-1) 38772113 72.03 % 38019940 73.78 % 365735 71.18 % 340238 77.27 %
Median Methylation 0.880 0.880 0.870 0.890