/CEMT/A95337_2_lane_gembs/HYCCLCCXY_3_2

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SAMPLE A95337_2_lane_gembs LANE HYCCLCCXY_3_2

Mapping Stats (Reads)

Concept Total Reads % Pair One Reads % Pair Two Reads %
Sequenced Reads 902431064 100.00 % 451215532 100.00 % 451215532 100.00 %
General Reads 893729708 99.04 % 448751677 99.45 % 444978031 98.62 %
Reads in Control sequences 0 0.00 % 0 0.00 % 0 0.00 %
Reads under conversion control 606427 0.07 % 304332 0.07 % 302095 0.07 %
Reads over conversion control 0 0.00 % 0 0.00 % 0 0.00 %
Unmapped reads 8094929 0.90 % 2159523 0.48 % 5935406 1.32 %
Bisulfite_reads C2T 456399441 50.57 % 229056077 50.76 % 227343364 50.38 %
Bisulfite_reads G2A 437936694 48.53 % 219999932 48.76 % 217936762 48.30 %



Uniqueness (Fragments)

Concept Value
Unique Fragments 390848964
Average Unique 86.62 %



Mapping Stats (Bases)

Concept Total Bases % Pair One Bases % Pair Two Bases %
Base Counts Overall A 52767108307 38.72 % 21580977290 31.67 % 31186131017 45.77 %
Base Counts Overall C 14736380768 10.81 % 574612032 0.84 % 14161768736 20.79 %
Base Counts Overall G 14789627063 10.85 % 14146073388 20.76 % 643553675 0.94 %
Base Counts Overall T 53051552635 38.93 % 31374937554 46.05 % 21676615081 31.81 %
Base Counts Overall N 922421891 0.68 % 456945068 0.67 % 465476823 0.68 %



Bisulfite Conversion Rate

Bisulfite Conversion Type Conversion Rate
Conversion Rate 0.9957835061268707
Over Conversion Rate NA



Correct Pairs

Concept Total Reads
Correct Pairs 434384088



Mapping Quality

Mapping Quality Histogram
HYCCLCCXY_3_2.mapq.png



Read Length

Read Length Reads
150 451215532
150 451215532



Insert Size Plot

Insert Size Histogram
HYCCLCCXY_3_2.isize.png