/CEMT/mapping_coverage/A95337_2_lane_gembs
BACK
SAMPLE A95337_2_lane_gembs
Read Level Counts
| Type |
#reads |
% |
#bases |
% |
| Total |
1677581904 |
100% |
215923004421 |
100% |
| Mapped |
1664965097 |
99.25 % |
214030483371 |
99.12 % |
| Passed |
1369935235 |
81.66 % |
169776004071 |
78.63 % |
| NotPassed |
295029862 |
17.59 % |
44254479300 |
20.50 % |
| |
|
|
|
|
| LowMAPQ |
185817434 |
11.08 % |
27872615100 |
12.91 % |
| MateUnmapped |
12616807 |
0.75 % |
1892521050 |
0.88 % |
| Duplicate |
90607500 |
5.40 % |
13591125000 |
6.29 % |
| BadOrientation |
120 |
0.00 % |
18000 |
0.00 % |
| LargeInsertSize |
18808 |
0.00 % |
2821200 |
0.00 % |
| |
|
|
|
|
| NotCorrectlyAligned |
18586000 |
1.11 % |
2787900000 |
1.29 % |
| Unmapped |
12616807 |
0.75 % |
1892521050 |
0.88 % |
Base Level Counts
| Bases |
# |
% |
| Total |
205478326050 |
100% |
| Passed |
158547210323 |
77.16 % |
| Trimmed |
5965728005 |
2.90 % |
| Clipped |
364907175 |
0.18 % |
| Overlapping |
35337414804 |
17.20 % |
| LowQuality |
5263065743 |
2.56 % |
Coverage and Quality
| Coverage Distribution |
Quality Distribution |
 |
 |
| GC/Coverage Heatmap |
Non-CpG Read Profile |
 |
 |