/CEMT/methylation/A95337_2_lane_gembs

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SAMPLE A95337_2_lane_gembs




CpG counts

Type Total Pass %
RefCpG 27244954 24775774 90.94 %
NonRefCpG 266945 209990 78.66 %

Coverage CpGs




Coverage Reference CpGs Coverage Information Reads Reference CpGs
./IMG//A95337_2_lane_gembs_coverage_refCpG.png ./IMG//A95337_2_lane_gembs_coverage_refCpGInf.png



Coverage Non Reference CpGs Coverage Information Reads Non-Reference CpGs
./IMG//A95337_2_lane_gembs_coverage_nonRefCpG.png ./IMG//A95337_2_lane_gembs_coverage_nonRefCpGinf.png

Quality CpGs




Genotype Quality Phred scaled Reference CpGs Genotype Quality Phred scaled Non-Reference CpGs
./IMG//A95337_2_lane_gembs_quality_refcpg.png ./IMG//A95337_2_lane_gembs_quality_nonRefCpg.png

Methylation CpGs




CpGs Methylation Distribution
./IMG//A95337_2_lane_gembs_methylation_levels.png

CpG Methylation Profile (From Individual Strands)

Type #AllReferenceCpG % #PassedReferenceCpG % #AllNonReferenceCpG % #PassedNonReferenceCpG %
Unmethylated (0-0.3) 7407485 13.76 % 6030586 11.86 % 59464 11.71 % 35603 8.18 %
Intermediate (0.3-0.7) 9585180 17.80 % 8734651 17.18 % 104171 20.52 % 80351 18.46 %
Methylated (0.7-1) 36856726 68.44 % 36081470 70.96 % 343961 67.76 % 319344 73.36 %
Median Methylation 0.850 0.860 0.840 0.860