/CEMT/A95338_2_lane_gembs/HYHL2CCXY_2_2

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SAMPLE A95338_2_lane_gembs LANE HYHL2CCXY_2_2

Mapping Stats (Reads)

Concept Total Reads % Pair One Reads % Pair Two Reads %
Sequenced Reads 975664856 100.00 % 487832428 100.00 % 487832428 100.00 %
General Reads 967371678 99.15 % 485897051 99.60 % 481474627 98.70 %
Reads in Control sequences 0 0.00 % 0 0.00 % 0 0.00 %
Reads under conversion control 211543 0.02 % 106164 0.02 % 105379 0.02 %
Reads over conversion control 0 0.00 % 0 0.00 % 0 0.00 %
Unmapped reads 8081635 0.83 % 1829213 0.37 % 6252422 1.28 %
Bisulfite_reads C2T 492862450 50.52 % 247411051 50.72 % 245451399 50.31 %
Bisulfite_reads G2A 474720771 48.66 % 238592164 48.91 % 236128607 48.40 %



Uniqueness (Fragments)

Concept Value
Unique Fragments 423685772
Average Unique 86.85 %



Mapping Stats (Bases)

Concept Total Bases % Pair One Bases % Pair Two Bases %
Base Counts Overall A 57384761771 38.95 % 23774779347 32.28 % 33609982424 45.63 %
Base Counts Overall C 15694807898 10.65 % 620250110 0.84 % 15074557788 20.46 %
Base Counts Overall G 15594430646 10.59 % 14947271234 20.29 % 647159412 0.88 %
Base Counts Overall T 57650059490 39.13 % 33826713884 45.92 % 23823345606 32.34 %
Base Counts Overall N 1001333451 0.68 % 493682053 0.67 % 507651398 0.69 %



Bisulfite Conversion Rate

Bisulfite Conversion Type Conversion Rate
Conversion Rate 0.9958708595424772
Over Conversion Rate NA



Correct Pairs

Concept Total Reads
Correct Pairs 470178485



Mapping Quality

Mapping Quality Histogram
HYHL2CCXY_2_2.mapq.png



Read Length

Read Length Reads
150 487832428
150 487832428



Insert Size Plot

Insert Size Histogram
HYHL2CCXY_2_2.isize.png