/CEMT/mapping_coverage/A95338_2_lane_gembs
BACK
SAMPLE A95338_2_lane_gembs
Read Level Counts
| Type |
#reads |
% |
#bases |
% |
| Total |
1838390474 |
100% |
240024343765 |
100% |
| Mapped |
1825177426 |
99.28 % |
238042386565 |
99.17 % |
| Passed |
1512093220 |
82.25 % |
191079755665 |
79.61 % |
| NotPassed |
313084206 |
17.03 % |
46962630900 |
19.57 % |
| |
|
|
|
|
| LowMAPQ |
196849954 |
10.71 % |
29527493100 |
12.30 % |
| MateUnmapped |
13213048 |
0.72 % |
1981957200 |
0.83 % |
| Duplicate |
94091446 |
5.12 % |
14113716900 |
5.88 % |
| BadOrientation |
100 |
0.00 % |
15000 |
0.00 % |
| LargeInsertSize |
18196 |
0.00 % |
2729400 |
0.00 % |
| |
|
|
|
|
| NotCorrectlyAligned |
22124510 |
1.20 % |
3318676500 |
1.38 % |
| Unmapped |
13213048 |
0.72 % |
1981957200 |
0.83 % |
Base Level Counts
| Bases |
# |
% |
| Total |
226801731900 |
100% |
| Passed |
178586084128 |
78.74 % |
| Trimmed |
6600884470 |
2.91 % |
| Clipped |
533835943 |
0.24 % |
| Overlapping |
35188140292 |
15.51 % |
| LowQuality |
5892787067 |
2.60 % |
Coverage and Quality
| Coverage Distribution |
Quality Distribution |
 |
 |
| GC/Coverage Heatmap |
Non-CpG Read Profile |
 |
 |