/CEMT/methylation/A95338_2_lane_gembs

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SAMPLE A95338_2_lane_gembs




CpG counts

Type Total Pass %
RefCpG 27253373 24958742 91.58 %
NonRefCpG 261973 210528 80.36 %

Coverage CpGs




Coverage Reference CpGs Coverage Information Reads Reference CpGs
./IMG//A95338_2_lane_gembs_coverage_refCpG.png ./IMG//A95338_2_lane_gembs_coverage_refCpGInf.png



Coverage Non Reference CpGs Coverage Information Reads Non-Reference CpGs
./IMG//A95338_2_lane_gembs_coverage_nonRefCpG.png ./IMG//A95338_2_lane_gembs_coverage_nonRefCpGinf.png

Quality CpGs




Genotype Quality Phred scaled Reference CpGs Genotype Quality Phred scaled Non-Reference CpGs
./IMG//A95338_2_lane_gembs_quality_refcpg.png ./IMG//A95338_2_lane_gembs_quality_nonRefCpg.png

Methylation CpGs




CpGs Methylation Distribution
./IMG//A95338_2_lane_gembs_methylation_levels.png

CpG Methylation Profile (From Individual Strands)

Type #AllReferenceCpG % #PassedReferenceCpG % #AllNonReferenceCpG % #PassedNonReferenceCpG %
Unmethylated (0-0.3) 7336843 13.59 % 6135687 11.99 % 53277 10.66 % 33012 7.63 %
Intermediate (0.3-0.7) 11532132 21.36 % 10672893 20.86 % 117247 23.46 % 93941 21.71 %
Methylated (0.7-1) 35109986 65.04 % 34367259 67.16 % 329330 65.89 % 305783 70.66 %
Median Methylation 0.820 0.830 0.820 0.840