/CEMT/mapping_coverage/B35055_1_lane_gembs
BACK
SAMPLE B35055_1_lane_gembs
Read Level Counts
| Type |
#reads |
% |
#bases |
% |
| Total |
944945257 |
100% |
123111529431 |
100% |
| Mapped |
939124194 |
99.38 % |
122238369981 |
99.29 % |
| Passed |
786270677 |
83.21 % |
99310342431 |
80.67 % |
| NotPassed |
152853517 |
16.18 % |
22928027550 |
18.62 % |
| |
|
|
|
|
| LowMAPQ |
98388368 |
10.41 % |
14758255200 |
11.99 % |
| MateUnmapped |
5821063 |
0.62 % |
873159450 |
0.71 % |
| Duplicate |
44794436 |
4.74 % |
6719165400 |
5.46 % |
| BadOrientation |
102 |
0.00 % |
15300 |
0.00 % |
| LargeInsertSize |
6984 |
0.00 % |
1047600 |
0.00 % |
| |
|
|
|
|
| NotCorrectlyAligned |
9663627 |
1.02 % |
1449544050 |
1.18 % |
| Unmapped |
5821063 |
0.62 % |
873159450 |
0.71 % |
Base Level Counts
| Bases |
# |
% |
| Total |
117931270950 |
100% |
| Passed |
93435917220 |
79.23 % |
| Trimmed |
3502423803 |
2.97 % |
| Clipped |
184480177 |
0.16 % |
| Overlapping |
18436448342 |
15.63 % |
| LowQuality |
2372001408 |
2.01 % |
Coverage and Quality
| Coverage Distribution |
Quality Distribution |
 |
 |
| GC/Coverage Heatmap |
Non-CpG Read Profile |
 |
 |