/CEMT/methylation/B35055_1_lane_gembs

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SAMPLE B35055_1_lane_gembs




CpG counts

Type Total Pass %
RefCpG 27106215 22630304 83.49 %
NonRefCpG 263229 196972 74.83 %

Coverage CpGs




Coverage Reference CpGs Coverage Information Reads Reference CpGs
./IMG//B35055_1_lane_gembs_coverage_refCpG.png ./IMG//B35055_1_lane_gembs_coverage_refCpGInf.png



Coverage Non Reference CpGs Coverage Information Reads Non-Reference CpGs
./IMG//B35055_1_lane_gembs_coverage_nonRefCpG.png ./IMG//B35055_1_lane_gembs_coverage_nonRefCpGinf.png

Quality CpGs




Genotype Quality Phred scaled Reference CpGs Genotype Quality Phred scaled Non-Reference CpGs
./IMG//B35055_1_lane_gembs_quality_refcpg.png ./IMG//B35055_1_lane_gembs_quality_nonRefCpg.png

Methylation CpGs




CpGs Methylation Distribution
./IMG//B35055_1_lane_gembs_methylation_levels.png

CpG Methylation Profile (From Individual Strands)

Type #AllReferenceCpG % #PassedReferenceCpG % #AllNonReferenceCpG % #PassedNonReferenceCpG %
Unmethylated (0-0.3) 7147987 13.35 % 4318643 9.10 % 56519 11.27 % 28863 6.96 %
Intermediate (0.3-0.7) 9757883 18.23 % 7955427 16.76 % 98494 19.64 % 69589 16.77 %
Methylated (0.7-1) 36629551 68.42 % 35183126 74.14 % 346473 69.09 % 316522 76.28 %
Median Methylation 0.840 0.860 0.840 0.870