{
    "name": "Untitled", 
    "desc": "No description", 
    "flagstat_qc": [
        {
            "total": 53805012, 
            "total_qc_failed": 0, 
            "duplicates": 0, 
            "duplicates_qc_failed": 0, 
            "mapped": 53074143, 
            "mapped_qc_failed": 0, 
            "mapped_pct": 98.64, 
            "paired": 53805012, 
            "paired_qc_failed": 0, 
            "read1": 26902506, 
            "read1_qc_failed": 0, 
            "read2": 26902506, 
            "read2_qc_failed": 0, 
            "paired_properly": 52495085, 
            "paired_properly_qc_failed": 0, 
            "paired_properly_pct": 97.57, 
            "with_itself": 52802636, 
            "with_itself_qc_failed": 0, 
            "singletons": 271507, 
            "singletons_qc_failed": 0, 
            "singletons_pct": 0.5, 
            "diff_chroms": 78827, 
            "diff_chroms_qc_failed": 0
        }
    ], 
    "ctl_flagstat_qc": [
        {
            "total": 146003154, 
            "total_qc_failed": 0, 
            "duplicates": 0, 
            "duplicates_qc_failed": 0, 
            "mapped": 143950255, 
            "mapped_qc_failed": 0, 
            "mapped_pct": 98.59, 
            "paired": 146003154, 
            "paired_qc_failed": 0, 
            "read1": 73001577, 
            "read1_qc_failed": 0, 
            "read2": 73001577, 
            "read2_qc_failed": 0, 
            "paired_properly": 139355986, 
            "paired_properly_qc_failed": 0, 
            "paired_properly_pct": 95.45, 
            "with_itself": 143134940, 
            "with_itself_qc_failed": 0, 
            "singletons": 815315, 
            "singletons_qc_failed": 0, 
            "singletons_pct": 0.56, 
            "diff_chroms": 200467, 
            "diff_chroms_qc_failed": 0
        }
    ], 
    "dup_qc": [
        {
            "unpaired_reads": 0, 
            "paired_reads": 23147561, 
            "unmapped_reads": 0, 
            "unpaired_dupes": 0, 
            "paired_dupes": 175887, 
            "paired_opt_dupes": 12888, 
            "dupes_pct": 0.007599
        }
    ], 
    "ctl_dup_qc": [
        {
            "unpaired_reads": 0, 
            "paired_reads": 61294235, 
            "unmapped_reads": 0, 
            "unpaired_dupes": 0, 
            "paired_dupes": 434896, 
            "paired_opt_dupes": 3707, 
            "dupes_pct": 0.007095
        }
    ], 
    "pbc_qc": [
        {
            "total_read_pairs": 23060795, 
            "distinct_read_pairs": 22899628, 
            "one_read_pair": 22742158, 
            "two_read_pair": 155020, 
            "NRF": 0.993011, 
            "PBC1": 0.993123, 
            "PBC2": 146.70467
        }
    ], 
    "ctl_pbc_qc": [
        {
            "total_read_pairs": 61180783, 
            "distinct_read_pairs": 60780225, 
            "one_read_pair": 60396899, 
            "two_read_pair": 377062, 
            "NRF": 0.993453, 
            "PBC1": 0.993693, 
            "PBC2": 160.177634
        }
    ], 
    "nodup_flagstat_qc": [
        {
            "total": 45943348, 
            "total_qc_failed": 0, 
            "duplicates": 0, 
            "duplicates_qc_failed": 0, 
            "mapped": 45943348, 
            "mapped_qc_failed": 0, 
            "mapped_pct": 100.0, 
            "paired": 45943348, 
            "paired_qc_failed": 0, 
            "read1": 22971674, 
            "read1_qc_failed": 0, 
            "read2": 22971674, 
            "read2_qc_failed": 0, 
            "paired_properly": 45943348, 
            "paired_properly_qc_failed": 0, 
            "paired_properly_pct": 100.0, 
            "with_itself": 45943348, 
            "with_itself_qc_failed": 0, 
            "singletons": 0, 
            "singletons_qc_failed": 0, 
            "singletons_pct": 0.0, 
            "diff_chroms": 0, 
            "diff_chroms_qc_failed": 0
        }
    ], 
    "ctl_nodup_flagstat_qc": [
        {
            "total": 121718678, 
            "total_qc_failed": 0, 
            "duplicates": 0, 
            "duplicates_qc_failed": 0, 
            "mapped": 121718678, 
            "mapped_qc_failed": 0, 
            "mapped_pct": 100.0, 
            "paired": 121718678, 
            "paired_qc_failed": 0, 
            "read1": 60859339, 
            "read1_qc_failed": 0, 
            "read2": 60859339, 
            "read2_qc_failed": 0, 
            "paired_properly": 121718678, 
            "paired_properly_qc_failed": 0, 
            "paired_properly_pct": 100.0, 
            "with_itself": 121718678, 
            "with_itself_qc_failed": 0, 
            "singletons": 0, 
            "singletons_qc_failed": 0, 
            "singletons_pct": 0.0, 
            "diff_chroms": 0, 
            "diff_chroms_qc_failed": 0
        }
    ], 
    "overlap_reproducibility_qc": {
        "Nt": 0, 
        "N1": 49836, 
        "Np": 0, 
        "N_opt": 49836, 
        "N_consv": 49836, 
        "opt_set": "rep1-pr", 
        "consv_set": "rep1-pr", 
        "rescue_ratio": 0.0, 
        "self_consistency_ratio": 1.0, 
        "reproducibility": "pass"
    }, 
    "xcor_score": [
        {
            "num_reads": 15000000, 
            "est_frag_len": -5, 
            "corr_est_frag_len": 0.176399164624696, 
            "phantom_peak": 50, 
            "corr_phantom_peak": 0.1820442, 
            "argmin_corr": 1500, 
            "min_corr": 0.168583, 
            "NSC": 1.046364, 
            "RSC": 0.580644
        }
    ], 
    "frip_macs2_qc": {
        "rep1": {
            "FRiP": 0.148371274852
        }, 
        "rep1-pr1": {
            "FRiP": 0.159403943156
        }, 
        "rep1-pr2": {
            "FRiP": 0.159210140881
        }
    }, 
    "overlap_frip_qc": {
        "rep1-pr": {
            "FRiP": 0.110081984738
        }
    }, 
    "jsd_qc": [
        {
            "pct_gen_enrich": 0.286725875738, 
            "auc": 0.494008151418, 
            "ch_div": 0.112689657103, 
            "elbow_pt": 7.9113062133e-239, 
            "jsd": 0.579576511609, 
            "syn_auc": 0.501646061562, 
            "syn_elbow_pt": 0.142077517179, 
            "syn_jsd": 0.26744655036
        }
    ]
}
