/CEMT/A95341_2_lane_gembs/HYHL2CCXY_5_2

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SAMPLE A95341_2_lane_gembs LANE HYHL2CCXY_5_2

Mapping Stats (Reads)

Concept Total Reads % Pair One Reads % Pair Two Reads %
Sequenced Reads 996976122 100.00 % 498488061 100.00 % 498488061 100.00 %
General Reads 988614477 99.16 % 495812109 99.46 % 492802368 98.86 %
Reads in Control sequences 0 0.00 % 0 0.00 % 0 0.00 %
Reads under conversion control 1548085 0.16 % 775822 0.16 % 772263 0.15 %
Reads over conversion control 0 0.00 % 0 0.00 % 0 0.00 %
Unmapped reads 6813560 0.68 % 1900130 0.38 % 4913430 0.99 %
Bisulfite_reads C2T 505473860 50.70 % 253361763 50.83 % 252112097 50.58 %
Bisulfite_reads G2A 484688702 48.62 % 243226168 48.79 % 241462534 48.44 %



Uniqueness (Fragments)

Concept Value
Unique Fragments 430922914
Average Unique 86.45 %



Mapping Stats (Bases)

Concept Total Bases % Pair One Bases % Pair Two Bases %
Base Counts Overall A 58462472117 38.83 % 25309786142 33.62 % 33152685975 44.04 %
Base Counts Overall C 16216019068 10.77 % 757533311 1.01 % 15458485757 20.54 %
Base Counts Overall G 16202411581 10.76 % 15433182531 20.50 % 769229050 1.02 %
Base Counts Overall T 58642541262 38.95 % 33265689014 44.19 % 25376852248 33.71 %
Base Counts Overall N 1019950394 0.68 % 505506213 0.67 % 514444181 0.68 %



Bisulfite Conversion Rate

Bisulfite Conversion Type Conversion Rate
Conversion Rate 0.9966302253188681
Over Conversion Rate NA



Correct Pairs

Concept Total Reads
Correct Pairs 480094141



Mapping Quality

Mapping Quality Histogram
HYHL2CCXY_5_2.mapq.png



Read Length

Read Length Reads
150 498488061
150 498488061



Insert Size Plot

Insert Size Histogram
HYHL2CCXY_5_2.isize.png