/CEMT/A95341_2_lane_gembs/HYHL2CCXY_6_2

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SAMPLE A95341_2_lane_gembs LANE HYHL2CCXY_6_2

Mapping Stats (Reads)

Concept Total Reads % Pair One Reads % Pair Two Reads %
Sequenced Reads 1008264384 100.00 % 504132192 100.00 % 504132192 100.00 %
General Reads 999637768 99.14 % 501445742 99.47 % 498192026 98.82 %
Reads in Control sequences 0 0.00 % 0 0.00 % 0 0.00 %
Reads under conversion control 1566805 0.16 % 785246 0.16 % 781559 0.16 %
Reads over conversion control 0 0.00 % 0 0.00 % 0 0.00 %
Unmapped reads 7059811 0.70 % 1901204 0.38 % 5158607 1.02 %
Bisulfite_reads C2T 511053712 50.69 % 256206395 50.82 % 254847317 50.55 %
Bisulfite_reads G2A 490150861 48.61 % 246024593 48.80 % 244126268 48.43 %



Uniqueness (Fragments)

Concept Value
Unique Fragments 435764517
Average Unique 86.44 %



Mapping Stats (Bases)

Concept Total Bases % Pair One Bases % Pair Two Bases %
Base Counts Overall A 59121848909 38.83 % 25596734990 33.63 % 33525113919 44.04 %
Base Counts Overall C 16396307747 10.77 % 762669088 1.00 % 15633638659 20.54 %
Base Counts Overall G 16389498607 10.77 % 15604529211 20.50 % 784969396 1.03 %
Base Counts Overall T 59300882390 38.95 % 33648420369 44.20 % 25652462021 33.70 %
Base Counts Overall N 1039384331 0.68 % 511607334 0.67 % 527776997 0.69 %



Bisulfite Conversion Rate

Bisulfite Conversion Type Conversion Rate
Conversion Rate 0.9964985406665534
Over Conversion Rate NA



Correct Pairs

Concept Total Reads
Correct Pairs 485399070



Mapping Quality

Mapping Quality Histogram
HYHL2CCXY_6_2.mapq.png



Read Length

Read Length Reads
150 504132192
150 504132192



Insert Size Plot

Insert Size Histogram
HYHL2CCXY_6_2.isize.png