/CEMT/mapping_coverage/A95341_2_lane_gembs
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SAMPLE A95341_2_lane_gembs
Read Level Counts
| Type |
#reads |
% |
#bases |
% |
| Total |
1901479330 |
100% |
246724336271 |
100% |
| Mapped |
1890647728 |
99.43 % |
245099595971 |
99.34 % |
| Passed |
1563494735 |
82.23 % |
196026647021 |
79.45 % |
| NotPassed |
327152993 |
17.21 % |
49072948950 |
19.89 % |
| |
|
|
|
|
| LowMAPQ |
215152488 |
11.32 % |
32272873200 |
13.08 % |
| MateUnmapped |
10831602 |
0.57 % |
1624740300 |
0.66 % |
| Duplicate |
86946492 |
4.57 % |
13041973800 |
5.29 % |
| BadOrientation |
174 |
0.00 % |
26100 |
0.00 % |
| LargeInsertSize |
28252 |
0.00 % |
4237800 |
0.00 % |
| |
|
|
|
|
| NotCorrectlyAligned |
25025587 |
1.32 % |
3753838050 |
1.52 % |
| Unmapped |
10831602 |
0.57 % |
1624740300 |
0.66 % |
Base Level Counts
| Bases |
# |
% |
| Total |
234510567900 |
100% |
| Passed |
184089365812 |
78.50 % |
| Trimmed |
6886208361 |
2.94 % |
| Clipped |
369870649 |
0.16 % |
| Overlapping |
38114050230 |
16.25 % |
| LowQuality |
5051072848 |
2.15 % |
Coverage and Quality
| Coverage Distribution |
Quality Distribution |
 |
 |
| GC/Coverage Heatmap |
Non-CpG Read Profile |
 |
 |