/CEMT/methylation/A95341_2_lane_gembs

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SAMPLE A95341_2_lane_gembs




CpG counts

Type Total Pass %
RefCpG 27269198 25179040 92.34 %
NonRefCpG 262278 208749 79.59 %

Coverage CpGs




Coverage Reference CpGs Coverage Information Reads Reference CpGs
./IMG//A95341_2_lane_gembs_coverage_refCpG.png ./IMG//A95341_2_lane_gembs_coverage_refCpGInf.png



Coverage Non Reference CpGs Coverage Information Reads Non-Reference CpGs
./IMG//A95341_2_lane_gembs_coverage_nonRefCpG.png ./IMG//A95341_2_lane_gembs_coverage_nonRefCpGinf.png

Quality CpGs




Genotype Quality Phred scaled Reference CpGs Genotype Quality Phred scaled Non-Reference CpGs
./IMG//A95341_2_lane_gembs_quality_refcpg.png ./IMG//A95341_2_lane_gembs_quality_nonRefCpg.png

Methylation CpGs




CpGs Methylation Distribution
./IMG//A95341_2_lane_gembs_methylation_levels.png

CpG Methylation Profile (From Individual Strands)

Type #AllReferenceCpG % #PassedReferenceCpG % #AllNonReferenceCpG % #PassedNonReferenceCpG %
Unmethylated (0-0.3) 5795426 10.73 % 5122249 9.96 % 45251 9.05 % 27182 6.29 %
Intermediate (0.3-0.7) 8603075 15.93 % 7912151 15.39 % 86965 17.40 % 65464 15.16 %
Methylated (0.7-1) 39607623 73.34 % 38383962 74.65 % 367720 73.55 % 339188 78.55 %
Median Methylation 0.870 0.870 0.870 0.880