/CEMT/mapping_coverage/B33201_1_lane_gembs
BACK
SAMPLE B33201_1_lane_gembs
Read Level Counts
| Type |
#reads |
% |
#bases |
% |
| Total |
874344386 |
100% |
117613729708 |
100% |
| Mapped |
865572837 |
99.00 % |
116297997358 |
98.88 % |
| Passed |
690012935 |
78.92 % |
89964012058 |
76.49 % |
| NotPassed |
175559902 |
20.08 % |
26333985300 |
22.39 % |
| |
|
|
|
|
| LowMAPQ |
93830364 |
10.73 % |
14074554600 |
11.97 % |
| MateUnmapped |
8771549 |
1.00 % |
1315732350 |
1.12 % |
| Duplicate |
61704343 |
7.06 % |
9255651450 |
7.87 % |
| BadOrientation |
60 |
0.00 % |
9000 |
0.00 % |
| LargeInsertSize |
11498 |
0.00 % |
1724700 |
0.00 % |
| |
|
|
|
|
| NotCorrectlyAligned |
20013637 |
2.29 % |
3002045550 |
2.55 % |
| Unmapped |
8771549 |
1.00 % |
1315732350 |
1.12 % |
Base Level Counts
| Bases |
# |
% |
| Total |
103492704750 |
100% |
| Passed |
84386433221 |
81.54 % |
| Trimmed |
3074219095 |
2.97 % |
| Clipped |
200345192 |
0.19 % |
| Overlapping |
13328347500 |
12.88 % |
| LowQuality |
2503359742 |
2.42 % |
Coverage and Quality
| Coverage Distribution |
Quality Distribution |
 |
 |
| GC/Coverage Heatmap |
Non-CpG Read Profile |
 |
 |