/CEMT/methylation/B33201_1_lane_gembs

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SAMPLE B33201_1_lane_gembs




CpG counts

Type Total Pass %
RefCpG 27028790 19281477 71.34 %
NonRefCpG 278489 167378 60.10 %

Coverage CpGs




Coverage Reference CpGs Coverage Information Reads Reference CpGs
./IMG//B33201_1_lane_gembs_coverage_refCpG.png ./IMG//B33201_1_lane_gembs_coverage_refCpGInf.png



Coverage Non Reference CpGs Coverage Information Reads Non-Reference CpGs
./IMG//B33201_1_lane_gembs_coverage_nonRefCpG.png ./IMG//B33201_1_lane_gembs_coverage_nonRefCpGinf.png

Quality CpGs




Genotype Quality Phred scaled Reference CpGs Genotype Quality Phred scaled Non-Reference CpGs
./IMG//B33201_1_lane_gembs_quality_refcpg.png ./IMG//B33201_1_lane_gembs_quality_nonRefCpg.png

Methylation CpGs




CpGs Methylation Distribution
./IMG//B33201_1_lane_gembs_methylation_levels.png

CpG Methylation Profile (From Individual Strands)

Type #AllReferenceCpG % #PassedReferenceCpG % #AllNonReferenceCpG % #PassedNonReferenceCpG %
Unmethylated (0-0.3) 6993806 13.22 % 3138949 7.52 % 79918 15.16 % 29586 7.85 %
Intermediate (0.3-0.7) 12455652 23.55 % 8527226 20.44 % 132650 25.17 % 80505 21.35 %
Methylated (0.7-1) 33436739 63.22 % 30060429 72.04 % 314473 59.67 % 267002 70.81 %
Median Methylation 0.800 0.840 0.780 0.840