{
    "name": "Untitled", 
    "desc": "No description", 
    "flagstat_qc": [
        {
            "total": 118365472, 
            "total_qc_failed": 0, 
            "duplicates": 0, 
            "duplicates_qc_failed": 0, 
            "mapped": 117394801, 
            "mapped_qc_failed": 0, 
            "mapped_pct": 99.18, 
            "paired": 118365472, 
            "paired_qc_failed": 0, 
            "read1": 59182736, 
            "read1_qc_failed": 0, 
            "read2": 59182736, 
            "read2_qc_failed": 0, 
            "paired_properly": 115303928, 
            "paired_properly_qc_failed": 0, 
            "paired_properly_pct": 97.41, 
            "with_itself": 116879024, 
            "with_itself_qc_failed": 0, 
            "singletons": 515777, 
            "singletons_qc_failed": 0, 
            "singletons_pct": 0.44, 
            "diff_chroms": 71572, 
            "diff_chroms_qc_failed": 0
        }
    ], 
    "ctl_flagstat_qc": [
        {
            "total": 110664060, 
            "total_qc_failed": 0, 
            "duplicates": 0, 
            "duplicates_qc_failed": 0, 
            "mapped": 108798311, 
            "mapped_qc_failed": 0, 
            "mapped_pct": 98.31, 
            "paired": 110664060, 
            "paired_qc_failed": 0, 
            "read1": 55332030, 
            "read1_qc_failed": 0, 
            "read2": 55332030, 
            "read2_qc_failed": 0, 
            "paired_properly": 106498695, 
            "paired_properly_qc_failed": 0, 
            "paired_properly_pct": 96.24, 
            "with_itself": 108092733, 
            "with_itself_qc_failed": 0, 
            "singletons": 705578, 
            "singletons_qc_failed": 0, 
            "singletons_pct": 0.64, 
            "diff_chroms": 137878, 
            "diff_chroms_qc_failed": 0
        }
    ], 
    "dup_qc": [
        {
            "unpaired_reads": 0, 
            "paired_reads": 53357970, 
            "unmapped_reads": 0, 
            "unpaired_dupes": 0, 
            "paired_dupes": 522666, 
            "paired_opt_dupes": 49997, 
            "dupes_pct": 0.009795
        }
    ], 
    "ctl_dup_qc": [
        {
            "unpaired_reads": 0, 
            "paired_reads": 46232784, 
            "unmapped_reads": 0, 
            "unpaired_dupes": 0, 
            "paired_dupes": 376972, 
            "paired_opt_dupes": 91434, 
            "dupes_pct": 0.008154
        }
    ], 
    "pbc_qc": [
        {
            "total_read_pairs": 53317172, 
            "distinct_read_pairs": 52798647, 
            "one_read_pair": 52287384, 
            "two_read_pair": 504471, 
            "NRF": 0.990275, 
            "PBC1": 0.990317, 
            "PBC2": 103.647948
        }
    ], 
    "ctl_pbc_qc": [
        {
            "total_read_pairs": 46175998, 
            "distinct_read_pairs": 45807818, 
            "one_read_pair": 45456138, 
            "two_read_pair": 344865, 
            "NRF": 0.992027, 
            "PBC1": 0.992323, 
            "PBC2": 131.808499
        }
    ], 
    "nodup_flagstat_qc": [
        {
            "total": 105670608, 
            "total_qc_failed": 0, 
            "duplicates": 0, 
            "duplicates_qc_failed": 0, 
            "mapped": 105670608, 
            "mapped_qc_failed": 0, 
            "mapped_pct": 100.0, 
            "paired": 105670608, 
            "paired_qc_failed": 0, 
            "read1": 52835304, 
            "read1_qc_failed": 0, 
            "read2": 52835304, 
            "read2_qc_failed": 0, 
            "paired_properly": 105670608, 
            "paired_properly_qc_failed": 0, 
            "paired_properly_pct": 100.0, 
            "with_itself": 105670608, 
            "with_itself_qc_failed": 0, 
            "singletons": 0, 
            "singletons_qc_failed": 0, 
            "singletons_pct": 0.0, 
            "diff_chroms": 0, 
            "diff_chroms_qc_failed": 0
        }
    ], 
    "ctl_nodup_flagstat_qc": [
        {
            "total": 91711624, 
            "total_qc_failed": 0, 
            "duplicates": 0, 
            "duplicates_qc_failed": 0, 
            "mapped": 91711624, 
            "mapped_qc_failed": 0, 
            "mapped_pct": 100.0, 
            "paired": 91711624, 
            "paired_qc_failed": 0, 
            "read1": 45855812, 
            "read1_qc_failed": 0, 
            "read2": 45855812, 
            "read2_qc_failed": 0, 
            "paired_properly": 91711624, 
            "paired_properly_qc_failed": 0, 
            "paired_properly_pct": 100.0, 
            "with_itself": 91711624, 
            "with_itself_qc_failed": 0, 
            "singletons": 0, 
            "singletons_qc_failed": 0, 
            "singletons_pct": 0.0, 
            "diff_chroms": 0, 
            "diff_chroms_qc_failed": 0
        }
    ], 
    "overlap_reproducibility_qc": {
        "Nt": 0, 
        "N1": 272367, 
        "Np": 0, 
        "N_opt": 272367, 
        "N_consv": 272367, 
        "opt_set": "rep1-pr", 
        "consv_set": "rep1-pr", 
        "rescue_ratio": 0.0, 
        "self_consistency_ratio": 1.0, 
        "reproducibility": "pass"
    }, 
    "xcor_score": [
        {
            "num_reads": 15000000, 
            "est_frag_len": 145, 
            "corr_est_frag_len": 0.181659898022088, 
            "phantom_peak": 45, 
            "corr_phantom_peak": 0.1785558, 
            "argmin_corr": 1500, 
            "min_corr": 0.169578, 
            "NSC": 1.071247, 
            "RSC": 1.345755
        }
    ], 
    "frip_macs2_qc": {
        "rep1": {
            "FRiP": 0.40181807882
        }, 
        "rep1-pr1": {
            "FRiP": 0.396511910552
        }, 
        "rep1-pr2": {
            "FRiP": 0.396338383374
        }
    }, 
    "overlap_frip_qc": {
        "rep1-pr": {
            "FRiP": 0.356596199456
        }
    }, 
    "jsd_qc": [
        {
            "pct_gen_enrich": 0.217908872354, 
            "auc": 0.495910954, 
            "ch_div": 0.112266033292, 
            "elbow_pt": 0.0, 
            "jsd": 0.722866659469, 
            "syn_auc": 0.50671641564, 
            "syn_elbow_pt": 0.213222253596, 
            "syn_jsd": 0.381051740779
        }
    ]
}