/cemt/mapping_coverage/K005720_0_lane_gembs
BACK
SAMPLE K005720_0_lane_gembs
Read Level Counts
| Type |
#reads |
% |
#bases |
% |
| Total |
1329618329 |
100% |
159531508525 |
100% |
| Mapped |
1317733854 |
99.11 % |
157748837275 |
98.88 % |
| Passed |
864960820 |
65.05 % |
89832882175 |
56.31 % |
| NotPassed |
452773034 |
34.05 % |
67915955100 |
42.57 % |
| |
|
|
|
|
| LowMAPQ |
370057860 |
27.83 % |
55508679000 |
34.79 % |
| MateUnmapped |
11884475 |
0.89 % |
1782671250 |
1.12 % |
| Duplicate |
54093839 |
4.07 % |
8114075850 |
5.09 % |
| BadOrientation |
674 |
0.00 % |
101100 |
0.00 % |
| LargeInsertSize |
52856 |
0.00 % |
7928400 |
0.00 % |
| |
|
|
|
|
| NotCorrectlyAligned |
28567805 |
2.15 % |
4285170750 |
2.69 % |
| Unmapped |
11884475 |
0.89 % |
1782671250 |
1.12 % |
Base Level Counts
| Bases |
# |
% |
| Total |
129700316100 |
100% |
| Passed |
79475614526 |
61.28 % |
| Trimmed |
3410146801 |
2.63 % |
| Clipped |
496466466 |
0.38 % |
| Overlapping |
39370967459 |
30.36 % |
| LowQuality |
6947120848 |
5.36 % |
Coverage and Quality
| Coverage Distribution |
Quality Distribution |
 |
 |
| GC/Coverage Heatmap |
Non-CpG Read Profile |
 |
 |