/cemt/methylation/K005720_0_lane_gembs

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SAMPLE K005720_0_lane_gembs




CpG counts

Type Total Pass %
RefCpG 26969203 18850862 69.90 %
NonRefCpG 263690 164933 62.55 %

Coverage CpGs




Coverage Reference CpGs Coverage Information Reads Reference CpGs
./IMG//K005720_0_lane_gembs_coverage_refCpG.png ./IMG//K005720_0_lane_gembs_coverage_refCpGInf.png



Coverage Non Reference CpGs Coverage Information Reads Non-Reference CpGs
./IMG//K005720_0_lane_gembs_coverage_nonRefCpG.png ./IMG//K005720_0_lane_gembs_coverage_nonRefCpGinf.png

Quality CpGs




Genotype Quality Phred scaled Reference CpGs Genotype Quality Phred scaled Non-Reference CpGs
./IMG//K005720_0_lane_gembs_quality_refcpg.png ./IMG//K005720_0_lane_gembs_quality_nonRefCpg.png

Methylation CpGs




CpGs Methylation Distribution
./IMG//K005720_0_lane_gembs_methylation_levels.png

CpG Methylation Profile (From Individual Strands)

Type #AllReferenceCpG % #PassedReferenceCpG % #AllNonReferenceCpG % #PassedNonReferenceCpG %
Unmethylated (0-0.3) 7485688 14.11 % 3834552 9.12 % 64148 12.78 % 29199 7.85 %
Intermediate (0.3-0.7) 16304307 30.73 % 12267083 29.18 % 165954 33.05 % 116028 31.18 %
Methylated (0.7-1) 29261113 55.16 % 25936087 61.70 % 272006 54.17 % 226917 60.98 %
Median Methylation 0.740 0.780 0.730 0.770